Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0748
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63960.1 68418.m08031 DNA-directed DNA polymerase delta catal...    29   3.9  
At3g46950.1 68416.m05097 mitochondrial transcription termination...    29   3.9  
At5g25980.2 68418.m03091 glycosyl hydrolase family 1 protein con...    28   6.9  
At5g25980.1 68418.m03090 glycosyl hydrolase family 1 protein con...    28   6.9  
At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative...    28   6.9  
At4g02310.1 68417.m00312 kelch repeat-containing F-box family pr...    27   9.1  

>At5g63960.1 68418.m08031 DNA-directed DNA polymerase delta
           catalytic subunit, putative (POLD1) similar to DNA
           polymerase delta [Glycine max] GI:2895198, OsPol delta
           large subunit [Oryza sativa (japonica cultivar-group)
           GI:9188570; contains Pfam profiles: PF03175 DNA
           polymerase type B, organellar and viral, PF00136 DNA
           polymerase family B, PF03104 DNA polymerase family B,
           exonuclease domain
          Length = 1081

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 230 ASFPKELKRIPLSHKLPLLYYQQKHKQ 310
           A  PK +KRI +  K  ++YYQQ+  Q
Sbjct: 176 AKVPKFVKRIEMVQKRSIMYYQQQKSQ 202


>At3g46950.1 68416.m05097 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 450

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +2

Query: 98  TLKPIGRDNDDLVSTVLLHLPQP-KSKDVQTLDIGKKLVELGFAKASFPKELKRIP 262
           TLK  G   ++++S VL   PQ  +S + + LD  +  + LGF++  F   +KR P
Sbjct: 294 TLKKCGLVEEEIIS-VLKSRPQCIRSSEQKILDSIEMFLGLGFSRDDFKMMVKRYP 348


>At5g25980.2 68418.m03091 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           identical to thioglucosidase (GI:871992) [Arabidopsis
           thaliana]; similar to myrosinase precursor (EC
           3.2.3.1)(Sinigrinase) (Thioglucosidase) SP|P37702 from
           [Arabidopsis thaliana]
          Length = 547

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 625 SFHLYSEINYLCIHLMLVNK 684
           +FH Y+ I+YLC HL  + K
Sbjct: 445 AFHDYNRIDYLCSHLCFLRK 464


>At5g25980.1 68418.m03090 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           identical to thioglucosidase (GI:871992) [Arabidopsis
           thaliana]; similar to myrosinase precursor (EC
           3.2.3.1)(Sinigrinase) (Thioglucosidase) SP|P37702 from
           [Arabidopsis thaliana]
          Length = 471

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 625 SFHLYSEINYLCIHLMLVNK 684
           +FH Y+ I+YLC HL  + K
Sbjct: 445 AFHDYNRIDYLCSHLCFLRK 464


>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative
           (UBP5) similar to GI:6648604
          Length = 924

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 74  CVARGQQVTLKPIGRDNDDLVSTVLLHLPQPKSKDVQTLDIGKKLVEL 217
           C + G     KP   DN DL+    L  P   S+ ++TL  G+  V L
Sbjct: 74  CDSPGSSTLKKPSRIDNSDLIYDSSLEDPSNTSEIIETLQEGRDYVLL 121


>At4g02310.1 68417.m00312 kelch repeat-containing F-box family
           protein contains Pfam PF00646: F-box domain; contains
           Pfam PF01344 : Kelch motif;
          Length = 349

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
 Frame = -1

Query: 697 RISNFYLPTLNVYKDNLFHYINGRNIT---SFEEKPNNYNCNNSFGSFLN*TLYECFSFH 527
           R+  +Y P L+    NL   ++   +    S  EK   Y C     +  + T Y  FSF 
Sbjct: 27  RVPRWYHPILSCVSKNLRFLVSSSELKITRSLLEKDRFYVCFQEHSNSPSLTTYHWFSFT 86

Query: 526 DVCTCLV 506
           +   CLV
Sbjct: 87  ENRRCLV 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,275,419
Number of Sequences: 28952
Number of extensions: 281928
Number of successful extensions: 785
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)