Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0747
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   3.1  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    27   4.1  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    26   7.2  

>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 683  ET*NTNIDGGEMVVATSYTEGTYTNHNPVVEQRTTGVTTAL 561
            ET N N+D  +  V  +YT    TN   V ++ +    T+L
Sbjct: 1032 ETTNLNLDSDKKFVRETYTSSNQTNEPDVYDKPSNSSRTSL 1072


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
 Frame = +1

Query: 349 RIAGPNYNVADNQVVWATGWGSMWLGS---GHSEQLRHVQLYTVNQ--NLCRTRHTSVLS 513
           R+ GP   +AD    +   W +  +G+   G    L H + Y +N    +      S+L+
Sbjct: 15  RVRGPRMKMADRLEHFTWAWFASAMGTGGIGMVTSLYHFRFYGLNTLGKIIFIFQLSILT 74

Query: 514 LPTCCV 531
           L  CC+
Sbjct: 75  LYICCI 80


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 620 TYTNHNPVVEQRTTGVT 570
           TYT HN +   R TG+T
Sbjct: 192 TYTGHNSLASTRVTGIT 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,359,306
Number of Sequences: 5004
Number of extensions: 70355
Number of successful extensions: 150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)