Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0747
         (798 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0445 + 3942820-3943030,3943719-3943853,3943942-3944150,394...    31   1.4  
01_06_1312 - 36205549-36206649,36207558-36207883,36209083-362091...    29   3.2  
02_04_0278 - 21507288-21507726,21507893-21507972,21508587-215088...    28   7.5  
12_01_0401 + 3174256-3174326,3175138-3176822,3177049-3177269           28   9.9  
11_06_0334 + 22437187-22437322,22437430-22437515,22437927-224380...    28   9.9  
10_02_0009 + 4128909-4130123                                           28   9.9  
09_06_0370 - 22610441-22610569,22610659-22611060,22611141-226111...    28   9.9  
01_01_0417 - 3135502-3135672,3135759-3135947,3136037-3136154,313...    28   9.9  

>08_01_0445 +
           3942820-3943030,3943719-3943853,3943942-3944150,
           3944258-3944464
          Length = 253

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
 Frame = +1

Query: 151 PNCSSLFIRCDAC*SWFIIRQQWRQGPSSE-PIHYAPNYVA----VTFESDLAILHVSTQ 315
           P+    F+R DAC  WF +   WR G  +      AP+ ++    V F  +   L V  +
Sbjct: 147 PDIRLWFVRLDACYPWFPVVLDWRAGELARYAAMLAPHQMSMRLGVVFNPEALELFVMKK 206

Query: 316 IAYVNSAVRPARIAGPNYNVAD 381
           +  V S ++      P    AD
Sbjct: 207 VFIVYSWLKQQEHPKPGLKTAD 228


>01_06_1312 -
           36205549-36206649,36207558-36207883,36209083-36209198,
           36210472-36211577
          Length = 882

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 334 AVRPARIAGPNYNVADNQVVWATGWGSMWLGSGHSEQLRHVQLYTVNQNL 483
           AV     AGP+   A   +  ATGW +  LG  ++E L+H+   T  +N+
Sbjct: 174 AVAADTFAGPDAGFAVMHL--ATGWTAGLLGYAYAEHLQHIGKETTAKNM 221


>02_04_0278 -
           21507288-21507726,21507893-21507972,21508587-21508840,
           21508988-21509180
          Length = 321

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 306 FNSNRLRQQRRETSQDCWPQLQCCRQPGRMGHWMGIHVA--R*WSFRTTSSRPTLY 467
           F + R R + ++T  DC    +CC +  R    +   VA  R     TTSS P LY
Sbjct: 170 FQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELRGTLRTTTSSYPPLY 225


>12_01_0401 + 3174256-3174326,3175138-3176822,3177049-3177269
          Length = 658

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -3

Query: 403 QWPIRP--GCLQHCNWGQQSWLVS 338
           QW ++P   CLQH  WG Q  ++S
Sbjct: 385 QWVVKPLTNCLQHPVWGSQGGVLS 408


>11_06_0334 +
           22437187-22437322,22437430-22437515,22437927-22438073,
           22438166-22438274,22439510-22439633,22439727-22439752,
           22439774-22440000,22440084-22440185
          Length = 318

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 291 CHLTCFNSNRLRQQRRETSQDCWPQLQCCRQPG 389
           C +TC++    R+ R + +Q C     CC QPG
Sbjct: 173 CFITCYD----RRVRNDLAQPCRELCLCCCQPG 201


>10_02_0009 + 4128909-4130123
          Length = 404

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -3

Query: 496 DEFCTGSGLQYKVGRDEVVLNDHYRATWIP-IQWPIRPG--CLQHCNWGQ 356
           DE C  +   + VGR E ++++HY AT +  + W  R     L + +W +
Sbjct: 290 DELCFPAFRDFCVGRRECLIDEHYLATLVTMLGWGRRNANRTLTYADWSR 339


>09_06_0370 -
           22610441-22610569,22610659-22611060,22611141-22611191,
           22611475-22611700,22612219-22612289,22612411-22612530,
           22612618-22612812,22612995-22613059,22613306-22613396,
           22613611-22613672,22613796-22613846,22614326-22614427,
           22614876-22614939,22615104-22615247
          Length = 590

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 14  TNQQRITGGSVVTIDRYPELAATLITSDGVQWVQGCGSSILNNRAVLTAAHC 169
           TN+   +G   VT+DRY +     I S+  Q+++  G  +L ++      HC
Sbjct: 477 TNESNGSGSGSVTVDRYGDGHYRNIASNVSQYIKMVGDQLL-HKIPKAVVHC 527


>01_01_0417 -
           3135502-3135672,3135759-3135947,3136037-3136154,
           3136398-3137048,3137146-3137309,3138598-3139098
          Length = 597

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 304 VSTQIAYVNSAVRPARIAGPNYNVA 378
           V T  A++N AV+P  + GP   VA
Sbjct: 233 VETAAAFLNKAVKPVLVGGPKMRVA 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,178,474
Number of Sequences: 37544
Number of extensions: 518256
Number of successful extensions: 1234
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)