Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0747
         (798 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    33   0.24 
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    29   3.9  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 21/81 (25%), Positives = 38/81 (46%)
 Frame = +1

Query: 244 IHYAPNYVAVTFESDLAILHVSTQIAYVNSAVRPARIAGPNYNVADNQVVWATGWGSMWL 423
           IH+ P Y  + F  D+AIL +       N   +P  +   ++     +    +GWGSM  
Sbjct: 104 IHFYPLYKDI-FSHDIAILEIPYPGIEFNEYAQPICLPSKDFVYTPGRQCVVSGWGSM-- 160

Query: 424 GSGHSEQLRHVQLYTVNQNLC 486
           G  ++E+L+   +  +N+  C
Sbjct: 161 GLRYAERLQAALIPIINRFDC 181



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 2   NAVPTNQQRITGGSVVTIDRYPELAATLITSDGVQWVQGCGSSILNNRAVLTAAHC 169
           +A  +   R+ GG       +P  AA     +       CG+SIL+   ++TAAHC
Sbjct: 18  DAAKSRIARVVGGFETVPGAFPWTAAL---RNKATKAHHCGASILDKTHLITAAHC 70


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = +2

Query: 119 CGSSILNNRAVLTAAHCLFGVMR-----VRVGSSFGNSGGRVHQVS 241
           CG S+++   VLTAAHC     R     VRVG     SG   H+V+
Sbjct: 84  CGGSLIDPNFVLTAAHCFAKDRRPTSYSVRVGGHRSGSGS-PHRVT 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,066,730
Number of Sequences: 27780
Number of extensions: 420366
Number of successful extensions: 1099
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)