BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= mg--0747 (798 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g29080.1 68414.m03560 peptidase C1A papain family protein con... 30 1.5 At5g44100.1 68418.m05396 casein kinase, putative similar to dual... 29 3.6 At3g10500.1 68416.m01260 no apical meristem (NAM) family protein... 29 4.7 At2g34080.1 68415.m04172 cysteine proteinase, putative contains ... 28 6.2 At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein... 28 8.3 At3g48340.1 68416.m05276 cysteine proteinase, putative similar t... 28 8.3 At3g18770.1 68416.m02382 expressed protein 28 8.3 >At1g29080.1 68414.m03560 peptidase C1A papain family protein contains similarity to cysteine protease SPCP1 GI:13491750 from [Ipomoea batatas]; contains Pfam profile PF00112: Papain family cysteine protease Length = 346 Score = 30.3 bits (65), Expect = 1.5 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -1 Query: 657 WGNGRGHILHRRNIHQPQPRCGTADYRSH 571 WG G+I RR++ PQ CG A Y S+ Sbjct: 316 WGEN-GYIRIRRDVEWPQGMCGVAQYASY 343 >At5g44100.1 68418.m05396 casein kinase, putative similar to dual specificity kinase 1 gi|1216484|gb|AAB47968 Length = 476 Score = 29.1 bits (62), Expect = 3.6 Identities = 17/66 (25%), Positives = 34/66 (51%) Frame = +1 Query: 307 STQIAYVNSAVRPARIAGPNYNVADNQVVWATGWGSMWLGSGHSEQLRHVQLYTVNQNLC 486 S++ A S+ RP+ GP+ + +++V ++G G G+G + VQ ++ L Sbjct: 392 SSRKAVAASSSRPSSAGGPSESRTSSRLVSSSGGGGSGSGNGRPSTSQRVQAGYESKTLS 451 Query: 487 RTRHTS 504 +R T+ Sbjct: 452 FSRATA 457 >At3g10500.1 68416.m01260 no apical meristem (NAM) family protein similar to to NAC2 (GI:645671) [Arabidopsis thaliana]; contains Pfam PF02365: No apical meristem (NAM) protein Length = 549 Score = 28.7 bits (61), Expect = 4.7 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -1 Query: 417 HGSPSSGPYDLVVCNIVIGASNPGWSHGAVDVSDL 313 H + SSG + I I SN GWS+G + DL Sbjct: 467 HAAQSSGSVHVTAGMITISDSNMGWSYGKNENLDL 501 >At2g34080.1 68415.m04172 cysteine proteinase, putative contains similarity to cysteine protease SPCP1 GI:13491750 from [Ipomoea batatas] Length = 345 Score = 28.3 bits (60), Expect = 6.2 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -1 Query: 657 WGNGRGHILHRRNIHQPQPRCGTADY 580 WG +G+I RR++ PQ CG A Y Sbjct: 315 WGE-KGYIRIRRDVAWPQGMCGVAQY 339 >At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein contains Pfam domain, PF00098: Zinc knuckle Length = 595 Score = 27.9 bits (59), Expect = 8.3 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%) Frame = -1 Query: 720 KTTFMRYSES-TM*NVKHEH*RWGNGRGHIL----HRRNIHQPQPRCGTADYRSHHRTVR 556 K+ YSES + V+ EH R+ R + RN + +PR D HHR+V+ Sbjct: 473 KSQKQHYSESGKIQRVEKEH-RYDERRHRYVDMESENRNRSEKKPRYDDRDSEKHHRSVK 531 Query: 555 IHQLRVYQ 532 + VY+ Sbjct: 532 GKEKHVYE 539 >At3g48340.1 68416.m05276 cysteine proteinase, putative similar to cysteine endopeptidase precursor [Ricinus communis] GI:2944446; contains Pfam profile PF00112: Papain family cysteine protease Length = 351 Score = 27.9 bits (59), Expect = 8.3 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -1 Query: 657 WGNGRGHILHRRNIHQPQPRCGTA 586 WG G G+I R I +P+ RCG A Sbjct: 304 WGEG-GYIKIEREIDEPEGRCGIA 326 >At3g18770.1 68416.m02382 expressed protein Length = 625 Score = 27.9 bits (59), Expect = 8.3 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%) Frame = +3 Query: 429 WSF-RTTSSRPTLYCKPEPVQNSSH 500 WSF R +S P++ C P P ++ SH Sbjct: 312 WSFDRYKASPPSVSCSPSPTRSDSH 336 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,970,508 Number of Sequences: 28952 Number of extensions: 387748 Number of successful extensions: 926 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 905 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 926 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1804564000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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