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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0747
         (798 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29080.1 68414.m03560 peptidase C1A papain family protein con...    30   1.5  
At5g44100.1 68418.m05396 casein kinase, putative similar to dual...    29   3.6  
At3g10500.1 68416.m01260 no apical meristem (NAM) family protein...    29   4.7  
At2g34080.1 68415.m04172 cysteine proteinase, putative contains ...    28   6.2  
At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein...    28   8.3  
At3g48340.1 68416.m05276 cysteine proteinase, putative similar t...    28   8.3  
At3g18770.1 68416.m02382 expressed protein                             28   8.3  

>At1g29080.1 68414.m03560 peptidase C1A papain family protein
           contains similarity to cysteine protease SPCP1
           GI:13491750 from [Ipomoea batatas]; contains Pfam
           profile PF00112: Papain family cysteine protease
          Length = 346

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 657 WGNGRGHILHRRNIHQPQPRCGTADYRSH 571
           WG   G+I  RR++  PQ  CG A Y S+
Sbjct: 316 WGEN-GYIRIRRDVEWPQGMCGVAQYASY 343


>At5g44100.1 68418.m05396 casein kinase, putative similar to dual
           specificity kinase 1 gi|1216484|gb|AAB47968
          Length = 476

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/66 (25%), Positives = 34/66 (51%)
 Frame = +1

Query: 307 STQIAYVNSAVRPARIAGPNYNVADNQVVWATGWGSMWLGSGHSEQLRHVQLYTVNQNLC 486
           S++ A   S+ RP+   GP+ +   +++V ++G G    G+G     + VQ    ++ L 
Sbjct: 392 SSRKAVAASSSRPSSAGGPSESRTSSRLVSSSGGGGSGSGNGRPSTSQRVQAGYESKTLS 451

Query: 487 RTRHTS 504
            +R T+
Sbjct: 452 FSRATA 457


>At3g10500.1 68416.m01260 no apical meristem (NAM) family protein
           similar to  to NAC2 (GI:645671) [Arabidopsis thaliana];
           contains Pfam PF02365: No apical meristem (NAM) protein
          Length = 549

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 417 HGSPSSGPYDLVVCNIVIGASNPGWSHGAVDVSDL 313
           H + SSG   +    I I  SN GWS+G  +  DL
Sbjct: 467 HAAQSSGSVHVTAGMITISDSNMGWSYGKNENLDL 501


>At2g34080.1 68415.m04172 cysteine proteinase, putative contains
           similarity to cysteine protease SPCP1 GI:13491750 from
           [Ipomoea batatas]
          Length = 345

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 657 WGNGRGHILHRRNIHQPQPRCGTADY 580
           WG  +G+I  RR++  PQ  CG A Y
Sbjct: 315 WGE-KGYIRIRRDVAWPQGMCGVAQY 339


>At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 595

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = -1

Query: 720 KTTFMRYSES-TM*NVKHEH*RWGNGRGHIL----HRRNIHQPQPRCGTADYRSHHRTVR 556
           K+    YSES  +  V+ EH R+   R   +      RN  + +PR    D   HHR+V+
Sbjct: 473 KSQKQHYSESGKIQRVEKEH-RYDERRHRYVDMESENRNRSEKKPRYDDRDSEKHHRSVK 531

Query: 555 IHQLRVYQ 532
             +  VY+
Sbjct: 532 GKEKHVYE 539


>At3g48340.1 68416.m05276 cysteine proteinase, putative similar to
           cysteine endopeptidase precursor [Ricinus communis]
           GI:2944446; contains Pfam profile PF00112: Papain family
           cysteine protease
          Length = 351

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 657 WGNGRGHILHRRNIHQPQPRCGTA 586
           WG G G+I   R I +P+ RCG A
Sbjct: 304 WGEG-GYIKIEREIDEPEGRCGIA 326


>At3g18770.1 68416.m02382 expressed protein 
          Length = 625

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 429 WSF-RTTSSRPTLYCKPEPVQNSSH 500
           WSF R  +S P++ C P P ++ SH
Sbjct: 312 WSFDRYKASPPSVSCSPSPTRSDSH 336


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,970,508
Number of Sequences: 28952
Number of extensions: 387748
Number of successful extensions: 926
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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