Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0746
(793 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05510.1 68415.m00583 glycine-rich protein 35 0.071
At2g05440.2 68415.m00575 glycine-rich protein 31 0.66
At2g05440.1 68415.m00574 glycine-rich protein 31 0.66
At3g63100.1 68416.m07087 glycine-rich protein 31 1.2
At1g27090.1 68414.m03302 glycine-rich protein 30 2.0
At5g05190.1 68418.m00553 expressed protein similar to unknown pr... 28 6.2
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex... 28 6.2
>At2g05510.1 68415.m00583 glycine-rich protein
Length = 127
Score = 34.7 bits (76), Expect = 0.071
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = -1
Query: 445 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 314
H G H GGH G + H GHNGG H GY G +Y
Sbjct: 44 HGGHGGHGGGGHYGGGGHGHG--GHNGGGGHGLDGYGGGHGGHY 85
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -1
Query: 460 HWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 314
H GH G H HGGH G H G+ GG H G+ G +Y
Sbjct: 50 HGGGGHYGGGGHGHGGHNG--GGGHGLDGYGGG----HGGHYGGGGGHY 92
>At2g05440.2 68415.m00575 glycine-rich protein
Length = 154
Score = 31.5 bits (68), Expect = 0.66
Identities = 17/42 (40%), Positives = 18/42 (42%)
Frame = -1
Query: 463 EHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 338
E + GH G H GG GH GHNGG H GY
Sbjct: 41 EGYGGGHGGHGGHGGGGGHGH-------GGHNGGGGHGLDGY 75
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -1
Query: 448 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 353
GH G H HGGH G H G+ GG H
Sbjct: 52 GHGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81
>At2g05440.1 68415.m00574 glycine-rich protein
Length = 127
Score = 31.5 bits (68), Expect = 0.66
Identities = 17/42 (40%), Positives = 18/42 (42%)
Frame = -1
Query: 463 EHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 338
E + GH G H GG GH GHNGG H GY
Sbjct: 41 EGYGGGHGGHGGHGGGGGHGH-------GGHNGGGGHGLDGY 75
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -1
Query: 448 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 353
GH G H HGGH G H G+ GG H
Sbjct: 52 GHGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Frame = -1
Query: 451 RGHNGRVSHDHG---GHQGHVTNVHWARG---HNGGVSHDHRGYTRSLGNNY 314
RGH H HG GH+ H + R H G H HRG+ R G +
Sbjct: 90 RGHGHGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGH 141
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -1
Query: 460 HWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNN 317
H G + R D G H+GH H RGH G H G+ R G +
Sbjct: 106 HRRHGRDHRHGRDRGHHRGH--GHHHHRGHRRGRGRGH-GHGRGRGGH 150
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -1
Query: 427 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSR 260
HD+G H + H GH G H G+ R G+ + G HGR+ R
Sbjct: 62 HDYGRDCCHCDHCH---GHGYGHGHREHGHDRGHGHGRGHGHGHGHGHRRHGRDHR 114
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/67 (28%), Positives = 24/67 (35%)
Frame = -1
Query: 460 HWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISN 281
H H H H H GH RGH G H HR + R + ++ G +
Sbjct: 70 HCDHCHGHGYGHGHREH-GHDRGHGHGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGH-GH 127
Query: 280 DHGRNSR 260
H R R
Sbjct: 128 HHHRGHR 134
>At1g27090.1 68414.m03302 glycine-rich protein
Length = 420
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = -1
Query: 451 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYTRSLGNNYRARYYDGR 290
+ GR GG G N RG GG + + Y +S GN Y+ YY+ R
Sbjct: 340 QNQRGRRGARRGG--GGYQNGRGGRGGGGGYQNGRYESYDQSGGNGYQRNYYNNR 392
>At5g05190.1 68418.m00553 expressed protein similar to unknown
protein (emb|CAB88044.1)
Length = 615
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = -1
Query: 463 EHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRIS 284
E + RG SHD ++ + GG++HD Y R + RIS
Sbjct: 354 ESYTRGSPSHPSHDEFDRYPRAHSLQMP-SYAGGMNHDFVDYMYHNNPRARGQGQGSRIS 412
Query: 283 NDHGRN 266
+ GRN
Sbjct: 413 GEMGRN 418
>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 494
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 72 HYESPDVGPALVEAPIVPSPVHVGPLVP 155
HY SP P +P PSP GPL P
Sbjct: 452 HYSSPPPPPVHHSSPPPPSPEFEGPLPP 479
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,637,167
Number of Sequences: 28952
Number of extensions: 195972
Number of successful extensions: 714
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -