Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0744
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    54   2e-08
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    29   0.54 
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     29   0.95 
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    28   1.3  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    28   1.3  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    27   2.9  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    26   6.7  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    26   6.7  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   6.7  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   6.7  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    25   8.8  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
 Frame = +2

Query: 257 LKAARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPG 436
           ++A+  Y   + + ++ A    PE+  K L VA +SD+GLCG +H+ +S++IR  L +P 
Sbjct: 69  MEASNKYYRVSDEVFKEAGTKAPEEG-KTLMVACSSDKGLCGGIHSSISRLIRRELHDPK 127

Query: 437 A-ENIKVICVGDKSRGILQR 493
             EN  +  +G+K R  L R
Sbjct: 128 TFENTSLCILGEKVRTQLLR 147



 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 23/44 (52%), Positives = 32/44 (72%)
 Frame = +3

Query: 123 YHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAER 254
           +H  +   ATLK I  RLKS+KNI+KIT+++K V+  K TRA+R
Sbjct: 24  FHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQR 67



 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +1

Query: 529 IGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESA 699
           IG   P+F +A Q+++ IL    ++    ++YNKF S VS+      LYT K+I  +
Sbjct: 160 IGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSFETVMKNLYTTKAINES 216


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
 Frame = +2

Query: 320 PPEDD-PKQLFVAMTSDR----GLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGI 484
           PPED  P++L   +T+      G+ GA+ TGV    +N L E GA ++ +IC       +
Sbjct: 70  PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128

Query: 485 LQRLYGKHSLVL 520
           L  +Y    L +
Sbjct: 129 LMTVYSLGELAV 140


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 478 RYPAEIVRKALISVANEIGRLPPTFLDASQLATAILT 588
           +YPA IV  A IS+A ++ +LP   +  S  A   LT
Sbjct: 182 KYPAHIVAVASISIACKLQQLPQPIIPRSFFAPPALT 218


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -1

Query: 439 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 305
           ST+F+   A + GY  +Y+  Q++V      N Q+  V FG  N +P
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -1

Query: 439 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 305
           ST+F+   A + GY  +Y+  Q++V      N Q+  V FG  N +P
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = -2

Query: 696 ALNRLLSVEGQVGLGVRDHRLELV--VNDL-SGTKLVSRGEDSSGQLTCVQESRWETSDL 526
           A+    S E Q  LG++  RL L+  ++ L +GT+ +SRG D  G +     +  ET  +
Sbjct: 219 AIRGFASTE-QFKLGIQTIRLSLISRLSSLRAGTRFLSRGVDDDGNVA----NFVETETI 273

Query: 525 ISNTNECFPY 496
           + ++  C  Y
Sbjct: 274 LDSSKYCVSY 283


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 458 CVGDKSRGILQRLYGKHSLVLLMRSDVSHLL-SWTQVSWPLLSSPRDTSLV 607
           C  ++ + ++QR YG H   L++ S+  + L S     + LL + ++ +LV
Sbjct: 221 CWSEEMQLLIQRTYGDHYFSLVLASETIYSLPSLENFLYMLLKNTKNLALV 271


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
 Frame = -2

Query: 543 WETSDLISNTNECFPYNLCRIPRD---LSPTQITLMFSAP---------GSLRRLRITLD 400
           + TS++ SNT+E +PY   +       LS + I+   S P           L    I   
Sbjct: 59  YPTSNVASNTSENYPYTGSKSLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTT 118

Query: 399 TPVCTAPHKPLSEVIATNNCLGSSSGGVTSALS 301
           +PV T    P S  I +N+ + SSS    S ++
Sbjct: 119 SPVPTTSSTPTSSSILSNSTIPSSSSISASTIT 151


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 578 LSSPRDTSLVPERSFTTSSSLW-SRTPSPTCPSTLRSLLRAPQADCVRLSGQRRAP 742
           L++PR T+  P     +S  L+ S +P P  P + RS L + + D    S  +R P
Sbjct: 44  LTTPRTTARTP---LASSPLLFESSSPGPNIPQSSRSHLLSQRNDLFLDSSSQRTP 96


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 353 AMTSDRGLCGAVHTGVSKVIRNRLSE 430
           A+ SD  +C  V TG+S   ++RLS+
Sbjct: 191 AVLSDDSICEIVETGLSMCCQSRLSQ 216


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -1

Query: 283 FTIGTSSFQVRSARVYLAADTIFMDCVIFWIFFTDLRRMEMAFKVAIF 140
           F + + SF     RVYL +  +  +  ++W FFT++      F + +F
Sbjct: 224 FFLNSLSFLKIPFRVYLDSHDLTPNLGLWWYFFTEMFNEFRTFFLFVF 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,461,954
Number of Sequences: 5004
Number of extensions: 76627
Number of successful extensions: 243
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)