Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0744
(757 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 40 0.002
07_03_0571 - 19602755-19603831 39 0.004
07_03_1697 - 28795521-28797328,28797430-28797550 33 0.25
04_03_0515 + 16698589-16701066 30 1.7
03_01_0207 - 1633177-1633372,1633623-1633688,1633778-1633859,163... 30 1.7
09_02_0469 - 9610883-9611338,9611749-9611871,9612199-9612375,961... 30 2.3
03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805... 29 4.0
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 28 9.2
06_03_0585 - 22528082-22530100 28 9.2
06_03_0580 + 22489184-22491202 28 9.2
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/27 (62%), Positives = 25/27 (92%)
Frame = +3
Query: 156 KAISIRLKSVKNIQKITQSMKMVSAAK 236
+A+ R+KSV+NIQKIT++MKMV+A+K
Sbjct: 60 RALRTRMKSVRNIQKITKAMKMVAASK 86
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Frame = +2
Query: 320 PPEDDPKQLFVAMTSDRGLCGAVHT---GVSKVIRNRLSEPGAENIKVICVGDKSR 478
P D K + VA+TSD+GLCG +++ VSK + S P E+ K + +G+K +
Sbjct: 112 PSVDVKKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKES-KYVILGEKGK 166
>07_03_0571 - 19602755-19603831
Length = 358
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/34 (50%), Positives = 27/34 (79%)
Frame = +3
Query: 150 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAE 251
+L+ + R+ SV+N QKIT++MK+V+AAK RA+
Sbjct: 37 SLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQ 70
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +2
Query: 338 KQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGDKSRGILQR 493
K V +T +RGLCG+ + V K R+ E ++ V+ VG K R
Sbjct: 111 KVALVVLTGERGLCGSFNNNVLKKAETRIEELKQLGLEYTVVSVGKKGNAYFIR 164
>07_03_1697 - 28795521-28797328,28797430-28797550
Length = 642
Score = 33.1 bits (72), Expect = 0.25
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -2
Query: 717 RTQSACGALNRLLSVEGQVGLGVRDHRLELVVNDLSGTK-LVSRGEDSSGQLTCVQESRW 541
R ++ G ++S +G G+ H L +D++ T + SSGQ SR
Sbjct: 40 RAKNRTGNSQEVISAPSSLGSGLPPHSKHLGSSDVASTSGSTPEAQISSGQQGADMTSRR 99
Query: 540 ETSDLISNTN 511
ET DL+S N
Sbjct: 100 ETDDLVSARN 109
>04_03_0515 + 16698589-16701066
Length = 825
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -2
Query: 423 RRLRITLDTPVCTAP--HKPLSEVIATNNCLGSSSGGVTSALS*NCTAPSP*GRAAFR 256
RR R T TAP + LS ++A+ S++ T+A + + PSP AAFR
Sbjct: 57 RRRRSTSVMSQTTAPMSRRRLSSILASTATASSTAASTTTAATASPARPSPPAHAAFR 114
>03_01_0207 -
1633177-1633372,1633623-1633688,1633778-1633859,
1633942-1634037,1634413-1634518,1634602-1634661,
1635114-1635234,1635929-1636040,1636118-1636217,
1636328-1636382,1636489-1636595,1636798-1636850,
1636989-1637114,1637909-1638065,1638226-1638421,
1638917-1639073,1639139-1639379,1639475-1639605,
1639704-1639826,1639929-1639984,1640610-1640767,
1640847-1640984,1641070-1641123
Length = 896
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 472 ISRYPAEIVRKALISVANEIGRLPPTFLDASQL 570
I RY A+++ L++ A EI +LPP F D QL
Sbjct: 746 IRRY-ADVIVHRLLAAALEIAKLPPLFQDGPQL 777
>09_02_0469 - 9610883-9611338,9611749-9611871,9612199-9612375,
9614416-9614501,9615519-9615678,9616122-9617438,
9619463-9620428,9621452-9621766
Length = 1199
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +2
Query: 416 NRLSEPGAENIKVICVGDKSRGILQRLYGKHSLVLLMRSDVSHLLSWTQVSWPLLSSPRD 595
+ L+E E +V+ +RG++Q++ G + S SHL S+ S P SS D
Sbjct: 851 SHLNEDRIEEPEVVTESSATRGMVQQIPGNQ-----LSSPSSHLSSFASSSAPFASSSWD 905
Query: 596 TS 601
TS
Sbjct: 906 TS 907
>03_06_0737 +
35879723-35879990,35880105-35880201,35880464-35880591,
35880686-35880767,35880855-35880918,35880930-35881022,
35881120-35881178,35881391-35881826,35882050-35882120,
35882201-35882351
Length = 482
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -2
Query: 432 GSLRRLRITLDTPVCTAPHKPLSEVIAT---NNCLGSSSGGVTSA 307
GSL+R R++ PH S I + C+GSS G TSA
Sbjct: 337 GSLQRNRVSYQVDSLMLPHPDPSHAICLPSHDTCMGSSGHGSTSA 381
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +2
Query: 623 TTSSSLWSRTPSPTCPSTLRSLLRAPQA 706
++SSSL RTPSPT P L LLR P +
Sbjct: 12 SSSSSLSPRTPSPTHP--LPHLLRLPSS 37
>06_03_0585 - 22528082-22530100
Length = 672
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/73 (27%), Positives = 28/73 (38%)
Frame = +2
Query: 500 GKHSLVLLMRSDVSHLLSWTQVSWPLLSSPRDTSLVPERSFTTSSSLWSRTPSPTCPSTL 679
G+H + + D + S Q W + SP S PE + T WS +P P +
Sbjct: 466 GRHVITMTRNLDRPIIASVLQSMWGV--SPTHQSWSPEHNATVVDYTWSTGHTPFGPFSE 523
Query: 680 RSLLRAPQADCVR 718
L Q D R
Sbjct: 524 TKSLSFVQKDAAR 536
>06_03_0580 + 22489184-22491202
Length = 672
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/73 (27%), Positives = 28/73 (38%)
Frame = +2
Query: 500 GKHSLVLLMRSDVSHLLSWTQVSWPLLSSPRDTSLVPERSFTTSSSLWSRTPSPTCPSTL 679
G+H + + D + S Q W + SP S PE + T WS +P P +
Sbjct: 466 GRHVITMTRNLDRPIIASVLQSMWGV--SPTHQSWSPEHNATVVDYTWSTGHTPFGPFSE 523
Query: 680 RSLLRAPQADCVR 718
L Q D R
Sbjct: 524 TKSLSFVQKDAAR 536
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,739,432
Number of Sequences: 37544
Number of extensions: 557586
Number of successful extensions: 1666
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1666
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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