Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0744
(757 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.) 90 2e-18
SB_53324| Best HMM Match : Trypsin (HMM E-Value=4.4e-08) 29 5.4
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045) 29 5.4
SB_44871| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 29 5.4
SB_52422| Best HMM Match : Nop17p (HMM E-Value=6.5e-13) 28 7.1
SB_38159| Best HMM Match : Peptidase_M28 (HMM E-Value=4.7e-09) 28 7.1
SB_47085| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_28864| Best HMM Match : Trypsin (HMM E-Value=1.4e-40) 28 7.1
SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_35142| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-13) 28 9.4
SB_5783| Best HMM Match : PIR (HMM E-Value=6.1) 28 9.4
>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 89.8 bits (213), Expect = 2e-18
Identities = 36/90 (40%), Positives = 60/90 (66%)
Frame = +2
Query: 257 LKAARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPG 436
LK+AR YG+GA Y++ E+ +DPK L V ++SDRGLCG +H+G++K ++ ++
Sbjct: 94 LKSARAYGDGATALYDKVEIKQESEDPKHLIVVLSSDRGLCGGIHSGLAKAVKASIAGNP 153
Query: 437 AENIKVICVGDKSRGILQRLYGKHSLVLLM 526
+ N+ ++ GDK++ IL R GK+ L+ M
Sbjct: 154 SRNVGIVSFGDKTKQILSRTLGKNMLMSFM 183
Score = 54.4 bits (125), Expect = 9e-08
Identities = 23/60 (38%), Positives = 40/60 (66%)
Frame = +1
Query: 526 EIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESATS 705
++G+ PP F +A+ LA IL +G++F +G + YN F+SVVS+ S +Y+ ++ +A S
Sbjct: 184 DVGKKPPLFCEATFLAQEILDAGFDFNTGDMFYNVFRSVVSFRASTKSIYSFDNLNNAAS 243
Score = 52.4 bits (120), Expect = 4e-07
Identities = 24/31 (77%), Positives = 30/31 (96%)
Frame = +3
Query: 162 ISIRLKSVKNIQKITQSMKMVSAAKYTRAER 254
+S+RL+SVKNIQKIT+SMKMVSAAK+ RAE+
Sbjct: 62 VSLRLRSVKNIQKITKSMKMVSAAKFGRAEK 92
>SB_53324| Best HMM Match : Trypsin (HMM E-Value=4.4e-08)
Length = 182
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = -2
Query: 585 EDSSGQLTCVQESRWETSDLISNTNECFPYNLCRIPRDLSPTQITLM 445
+D G L+C + +W L+S +C+ +P++L T+I+ +
Sbjct: 126 KDRGGPLSCESQGKWYLKGLVSTGTDCY----SNMPKNLIFTKISFL 168
>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
Length = 1050
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 224 HHLHGLCDFLDIFHRFKTDGNGLQSSHIPVWL 129
+H+ C+ + F+R + G G H+ VWL
Sbjct: 595 NHIRNRCNVENFFYRIEFQGRGTAHVHLLVWL 626
>SB_44871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = -2
Query: 621 NDLSGTKLVSRGEDSSGQLTCVQESRWETSDLISNTNECFPYNLCRIPRDLSPTQITLMF 442
ND+ T+ GE S+G +T + R L S+ + FP + C + T I+++F
Sbjct: 21 NDIKNTRAQVWGE-SAGDITETRGLRGRALSLASSASLVFPSHECLLDPTSCTTGISVLF 79
Query: 441 SAPGSLRRL 415
S RR+
Sbjct: 80 WFKYSERRM 88
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 28.7 bits (61), Expect = 5.4
Identities = 23/90 (25%), Positives = 37/90 (41%)
Frame = +1
Query: 472 ISRYPAEIVRKALISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSY 651
++ P E+++ L S A R+ A + + T F + NKF +V Y
Sbjct: 721 LATIPLEVIQTRLQSSAFRSQRVRVNISSAVSTSAGVGTGTVNFSTRTTTVNKFSGIVPY 780
Query: 652 AQSDLPLYTKKSIESATS*LRTTLWTATCS 741
A+ + + I+S L TTL T S
Sbjct: 781 ARY---MVKNEGIQSLFKGLGTTLLGVTPS 807
>SB_52422| Best HMM Match : Nop17p (HMM E-Value=6.5e-13)
Length = 175
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = -2
Query: 555 QESRWETSDLISNTNECFP---YNLCRIPRDLSPTQITLMFSAPG 430
+ES TS LIS P YN+ P D P I L S PG
Sbjct: 82 EESSKSTSQLISTLEPSIPQPMYNILTEPSDDKPEFIVLEISLPG 126
>SB_38159| Best HMM Match : Peptidase_M28 (HMM E-Value=4.7e-09)
Length = 1049
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 753 PCRIGARRCPESRTQSACGALNRLLSVEGQV 661
PC + R CPE+R + ACG RL EG +
Sbjct: 77 PCAL--RPCPETRNRCACGC--RLTEQEGMI 103
>SB_47085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = -2
Query: 555 QESRWETSDLISNTNECFP---YNLCRIPRDLSPTQITLMFSAPG 430
+ES TS LIS P YN+ P D P I L S PG
Sbjct: 191 EESSKSTSQLISTLEPSIPQPMYNILTEPSDDKPEFIVLEISLPG 235
>SB_28864| Best HMM Match : Trypsin (HMM E-Value=1.4e-40)
Length = 230
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 582 DSSGQLTCVQESRWETSDLISNTNEC 505
DS G L C + RW + ++S +EC
Sbjct: 174 DSGGPLACEERGRWYLTGVVSYGHEC 199
>SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1203
Score = 28.3 bits (60), Expect = 7.1
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +3
Query: 174 LKSVKNIQKITQSMKMVSAAKYTRAERT*KLLVPMVKVQYSSMKGLRLHLPKMTPSNCLL 353
LK +N + T+ K+VS T + KL + + K Q ++M+G + L T SNC L
Sbjct: 202 LKKFENSRMATK--KLVSDDDGTPYRKKMKLSLKVNKEQQNTMEGQKAGLNTQTESNCYL 259
>SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 305 RAEVTPPEDDPKQLFVAMTSDRGLCG 382
RA TPPE K + + S GLCG
Sbjct: 263 RARATPPEVTDKMAILRLPSGLGLCG 288
>SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 623 TTSSSLWSRTPSPTCPSTLRSLLRAPQADCVR 718
T +S+ + RTP P CP + L P+ +R
Sbjct: 260 TNTSASYCRTPEPRCPPLVNFSLDLPECFAIR 291
>SB_35142| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-13)
Length = 302
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = -2
Query: 585 EDSSGQLTCVQESRWETSDLISNTNECFPYNLCRIPRDLSPTQITL 448
E+ + + + ++E + +N+ FP+ R+P+D+ PT+ TL
Sbjct: 58 EEIHHKFSSAGQGKFERNGRSVVSNDDFPHKDIRLPKDVVPTKYTL 103
>SB_5783| Best HMM Match : PIR (HMM E-Value=6.1)
Length = 215
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 71 NVGTLRTGCRHPSRGGGLP 127
N+ TL TG R P GGG+P
Sbjct: 26 NLNTLPTGARQPVPGGGVP 44
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,902,984
Number of Sequences: 59808
Number of extensions: 629353
Number of successful extensions: 1678
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1676
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -