Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0744
(757 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial... 45 5e-05
At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast... 42 6e-04
At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast... 37 0.013
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 32 0.36
At5g18860.1 68418.m02241 inosine-uridine preferring nucleoside h... 31 0.83
At2g36670.2 68415.m04498 aspartyl protease family protein contai... 28 5.8
At2g36670.1 68415.m04497 aspartyl protease family protein contai... 28 5.8
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami... 28 7.7
At4g01380.1 68417.m00178 plastocyanin-like domain-containing pro... 28 7.7
At2g04400.1 68415.m00444 indole-3-glycerol phosphate synthase (I... 28 7.7
At1g70640.1 68414.m08143 octicosapeptide/Phox/Bem1p (PB1) domain... 28 7.7
>At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial
(ATPC) identical to SP|Q96250 ATP synthase gamma chain,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase
Length = 325
Score = 45.2 bits (102), Expect = 5e-05
Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Frame = +2
Query: 320 PPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIR--NRLSEPGAENIKVICVGDKSRGILQR 493
P D K + V ++SD+GLCG +++ V KV R +L+ + ++ + VG+K++ I+ R
Sbjct: 98 PSIDVKKSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFR 157
Query: 494 LYGKHSLVLLMRSDVSHLLSWTQVS 568
K+ +VL + + L++ QVS
Sbjct: 158 -DSKNDIVLSVTELNKNPLNYAQVS 181
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/33 (57%), Positives = 29/33 (87%)
Frame = +3
Query: 138 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAK 236
R+++T + + R+KSVKNIQKIT++MKMV+A+K
Sbjct: 41 RSIST-QVVRNRMKSVKNIQKITKAMKMVAASK 72
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +1
Query: 508 LISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKS 687
++ E+ + P + S LA IL + EF + +I+YNKF SVV++ + + + +
Sbjct: 163 IVLSVTELNKNPLNYAQVSVLADDILKN-VEFDALRIVYNKFHSVVAFLPTVSTVLSPEI 221
Query: 688 IE 693
IE
Sbjct: 222 IE 223
>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
(ATPC1) identical to SP|Q01908 ATP synthase gamma chain
1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}
Length = 373
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = +3
Query: 147 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAE 251
A+L+ + R+ SVKN QKIT++MK+V+AAK RA+
Sbjct: 51 ASLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQ 85
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 338 KQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGDKSRG-ILQRLY 499
K V +T DRGLCG + + K R+ E ++ VI VG K L+R Y
Sbjct: 126 KVALVVVTGDRGLCGGFNNFIIKKAEARIKELKGLGLEYTVISVGKKGNSYFLRRPY 182
>At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast
(ATPC2) identical to SP|Q01909 ATP synthase gamma chain
2, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase;
similar to ATP synthase gamma-subunit GI:21241 from
[Spinacia oleracea]
Length = 386
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/35 (45%), Positives = 27/35 (77%)
Frame = +3
Query: 147 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAE 251
A ++ + R+ SVKN QKIT++M++V+AA+ RA+
Sbjct: 61 AGIRELRERIDSVKNTQKITEAMRLVAAARVRRAQ 95
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +2
Query: 350 VAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGDKSRGILQR 493
V +T D+GLCG + V+K R+ E I VI VG K R
Sbjct: 140 VVVTGDKGLCGGFNNAVTKKATLRVQELKQRGIDCVVISVGKKGNAYFSR 189
>At2g45540.1 68415.m05663 WD-40 repeat family protein /
beige-related contains Pfam PF02138: Beige/BEACH domain;
contains Pfam PF00400: WD domain, G-beta repeat (3
copies)
Length = 2946
Score = 32.3 bits (70), Expect = 0.36
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 753 PCRIGARRCPESRTQSACGALNRLLSVEGQVGLGVR 646
PC + R CP++ A G L R V GQV + R
Sbjct: 634 PCLLSGRFCPDASLSGAAGTLRRPAEVLGQVHVATR 669
>At5g18860.1 68418.m02241 inosine-uridine preferring nucleoside
hydrolase family protein contains Pfam profile PF01156:
Inosine-uridine preferring nucleoside hydrolase
Length = 890
Score = 31.1 bits (67), Expect = 0.83
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Frame = +2
Query: 437 AENIKVICVGDKSRG---ILQRLYGKHSLVLLMRSDVSHLLSWTQVSWPLLSSPRDTSLV 607
AE+IKVI GD+SR ++ +L GK + +L R D L+S ++ L + ++++
Sbjct: 820 AEHIKVIAEGDESRDGKILIDKLRGK-QIKILERVD---LISISESFASRLDDKKQSAVI 875
Query: 608 PERSFTTSSSLWSRTPS 658
SF +WS PS
Sbjct: 876 --GSFEEQKKIWSTPPS 890
>At2g36670.2 68415.m04498 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 507
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 444 FSAPGSLRRLRITLDTPVCTAPHKPLSEVIATNNCLGSS 328
F APGSL +T P+C++ + + + NN G S
Sbjct: 147 FDAPGSLTAGSVTCSDPICSSVFQTTAAQCSENNQCGYS 185
>At2g36670.1 68415.m04497 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 512
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 444 FSAPGSLRRLRITLDTPVCTAPHKPLSEVIATNNCLGSS 328
F APGSL +T P+C++ + + + NN G S
Sbjct: 152 FDAPGSLTAGSVTCSDPICSSVFQTTAAQCSENNQCGYS 190
>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
protein contains Pfam profile PF04091: Exocyst complex
subunit Sec15-like
Length = 771
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -1
Query: 472 FISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVRGHSNKQLLG 335
F H HL + R AE HF T ++A+ ++ G K++ G
Sbjct: 536 FFRHAAHLSGVPLRMAERGRRHFPLTKSQNTAEDTLSGMLKKKIDG 581
>At4g01380.1 68417.m00178 plastocyanin-like domain-containing
protein
Length = 210
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 546 YFLGRKSAGHCYPHLGIRV 602
YF+ K+ GHCY L +RV
Sbjct: 152 YFISSKTPGHCYAGLKLRV 170
>At2g04400.1 68415.m00444 indole-3-glycerol phosphate synthase
(IGPS) nearly identical to SP|P49572
Length = 402
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 693 LNRLLSVEGQVGLGVRDHRLELVVNDLSGTKLVSRGE 583
+ R+L +EG +G+ + LE D+S TK + GE
Sbjct: 304 MGRVLGIEGIELVGINNRSLETFEVDISNTKKLLEGE 340
>At1g70640.1 68414.m08143 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile PF00564:
PB1 domain
Length = 174
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +2
Query: 572 PLLSSPRDTSLVPERSFTTSSSLWSRTPSPTCPST 676
PL S+ + P S T+SSS SR+ SP PST
Sbjct: 107 PLKSTRTTANSSPPPSTTSSSSSKSRSRSPPSPST 141
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,522,112
Number of Sequences: 28952
Number of extensions: 423227
Number of successful extensions: 1179
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -