Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0743
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 33 0.044
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.54
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.71
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 29 0.71
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 28 1.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.2
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 2.9
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 3.8
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 27 3.8
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 26 5.0
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 25 8.8
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 33.1 bits (72), Expect = 0.044
Identities = 22/63 (34%), Positives = 33/63 (52%)
Frame = +2
Query: 314 SRQTVPTRKDGSSLS*PTSRDTTSGTEPRSDSSSTNGSFRQTPPSNALLSDSWISLTT*M 493
S +V + SS S P+S TT+ T P S SSS++ S + S++ S S S ++
Sbjct: 128 SSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 187
Query: 494 MSS 502
SS
Sbjct: 188 SSS 190
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/65 (26%), Positives = 34/65 (52%)
Frame = +2
Query: 308 ASSRQTVPTRKDGSSLS*PTSRDTTSGTEPRSDSSSTNGSFRQTPPSNALLSDSWISLTT 487
+SS + P+ ++ + P+S ++S + S SSS++ S + S++ S S S ++
Sbjct: 137 SSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 196
Query: 488 *MMSS 502
SS
Sbjct: 197 SSSSS 201
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 29.5 bits (63), Expect = 0.54
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 299 WMVASSRQTVPTRKDGSSLS*PTSRDTTSGTEPRSDSSSTNGSFRQTPPSNALLSDS 469
+ + SS T P+ SS S P+S + S + +S SSS++ S + S++ S S
Sbjct: 145 YFITSSSST-PSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSS 200
Score = 28.3 bits (60), Expect = 1.2
Identities = 31/137 (22%), Positives = 60/137 (43%)
Frame = +2
Query: 68 LQMSGNTSFQVMADFDLLYDCTWPTTALTNPGLWPYTLHHESIQDCIIPPCPTASIPGPW 247
L G ++ CT T++L+ G T+ SI +I ++S +
Sbjct: 94 LSFDGGETYSQYFTLQACSTCTISTSSLSYSG----TISSTSIAPSMIGTRTSSSY---F 146
Query: 248 VLL*SAGETSTISLAPWWMVASSRQTVPTRKDGSSLS*PTSRDTTSGTEPRSDSSSTNGS 427
+ S+ +S+ S + +SS ++ + K SS S + ++S + +S SSS++ S
Sbjct: 147 ITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSS 206
Query: 428 FRQTPPSNALLSDSWIS 478
PS++ S + S
Sbjct: 207 KSSASPSSSKSSSKFSS 223
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.1 bits (62), Expect = 0.71
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 546 PIDRYRQQQCKFTMPSICRPSFCGPLTGT 632
P + R Q C+ P +C P C P T T
Sbjct: 281 PCGKTRGQDCEHPCPLLCHPGPCPPCTAT 309
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 29.1 bits (62), Expect = 0.71
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +2
Query: 269 ETSTISLAPWWMVASS-RQTVPTRKDGSSLS*PTSRDTTSGTEPRSDSSSTNGSFRQTPP 445
E T+S + ++SS + T D + + P + D S NG + PP
Sbjct: 360 ENDTLSESSTTSISSSPSENSDTSDDLTKVDSPNKSLVNDNVSAKHDKESENGKSKFPPP 419
Query: 446 SNALLSDSWIS 478
S L++ S IS
Sbjct: 420 SQTLVTTSTIS 430
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 221 PTASIPGPWVLL*SAGETSTISLAPWWMVASS 316
P A P PW ++ +ST S APW ASS
Sbjct: 401 PQAGHPPPWAAASTSVSSSTSSPAPWAKPASS 432
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 2.2
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = +2
Query: 275 STISLAPWWMVASSRQTVPTRKDGSSLS*PTSRD---TTSGTEPRSDSSSTNGSFRQTPP 445
ST S A + ++ QT T + +S + ++ TTS T P+ S+ ++ SF P
Sbjct: 262 STSSSASAYSYITTLQTATTAQQTTSENTYSTSGPNLTTSNTSPQISSTISSSSFIVESP 321
Query: 446 SNALLSDSWISLT 484
S AL + S ++T
Sbjct: 322 SVALSTSSTTTIT 334
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 327 YRRGRMVQVYPDQLRETLPREQSPVRILRPRM-VHFVKPRHQ 449
+ G + ++ D + T PRE SPV RP + F+K RH+
Sbjct: 137 FLEGPVEEIPLDDIEPTSPREASPVFNGRPPIPPEFLKSRHK 178
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 3.8
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 221 PTASIPGPWVLL*SAGETSTISLAPWWMVASS-RQTVPTRKDGSSLS*PTSRDTTSGTEP 397
P+AS+ V+L SA ET T+S + W +V++S TV S P + P
Sbjct: 79 PSASLLSSSVVLYSAKETVTVS-SYWSLVSTSVTGTVYVPYTSSVACFPYATSDAPNPIP 137
Query: 398 RSDSSST 418
R DS+++
Sbjct: 138 RGDSATS 144
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 338 KDGSSLS*PTSRDTTSGTEPRSDSSSTNGSF 430
K+G L+ S DT+S T P S S GSF
Sbjct: 148 KEGRQLTTENSSDTSSMTHPVQPSPSVLGSF 178
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 139 HNCLD*SRSMALHSSPRIYSGLHYSSMP--NCVNSWTVGAPM 258
+N D SR+ SSP I S Y SMP N V+S + AP+
Sbjct: 370 NNIFDVSRNNHEVSSPLIQSPGSYVSMPSINMVSSLPISAPV 411
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.4 bits (53), Expect = 8.8
Identities = 25/89 (28%), Positives = 39/89 (43%)
Frame = +2
Query: 311 SSRQTVPTRKDGSSLS*PTSRDTTSGTEPRSDSSSTNGSFRQTPPSNALLSDSWISLTT* 490
SS + T GSSL + +SG++ S SS + PP + + +T
Sbjct: 37 SSSSSSNTDSSGSSLGSLSLNSNSSGSDNDSKVSSPSREIPSDPPLPRAVPTVRLGRSTS 96
Query: 491 MMSSW*LS*SHRLGEEPRPDRSIPSAAVQ 577
S L+ + E +P RS+P+AA Q
Sbjct: 97 SRSRNSLNLDMKDPSE-KPRRSLPTAAGQ 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,380,660
Number of Sequences: 5004
Number of extensions: 76261
Number of successful extensions: 263
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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