Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0743
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0139 + 1263356-1264273 32 0.43
07_03_0479 + 18564733-18565716 32 0.56
07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660 30 1.7
11_01_0199 + 1563483-1563572,1563673-1563852,1564091-1564402,156... 30 2.3
10_08_1025 - 22391267-22391767,22392641-22392736,22392838-223931... 30 2.3
09_03_0103 - 12383585-12384700 29 3.0
02_01_0308 + 2064510-2065613 29 3.0
06_01_0235 + 1789037-1790077 29 4.0
07_03_0563 - 19542116-19542217,19542631-19542712,19543823-195445... 29 5.2
02_05_0795 - 31792231-31794780 29 5.2
12_02_0427 + 18973358-18973364,18974195-18974300,18974763-189748... 28 6.9
05_07_0179 + 28195929-28195954,28195966-28196286,28196397-281966... 28 6.9
04_03_0465 - 16227552-16227842,16227993-16228217,16228342-162284... 28 6.9
02_05_0572 + 30082734-30082739,30083136-30083383,30083695-300838... 28 6.9
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114... 28 9.2
06_01_0499 - 3581145-3582425 28 9.2
>01_01_0139 + 1263356-1264273
Length = 305
Score = 32.3 bits (70), Expect = 0.43
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 260 SAGETSTISLAPWWMVASS-RQTVPTRKDGSSLS*PTSRDTTSGTEPRS 403
SA +ST +LAPW + R + PTR+ + + PT+ TT+ R+
Sbjct: 94 SASASSTPALAPWRPSSRRPRSSAPTRRTAAGATSPTTPSTTTSARART 142
>07_03_0479 + 18564733-18565716
Length = 327
Score = 31.9 bits (69), Expect = 0.56
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +3
Query: 537 NPVPIDRYRQQQCKFTMPSICRPSFCGPLTGTHNQLSYYMTICNTCPRNYPWVGNPLGQ 713
+P+P+D Y T P + FC + G H ++ + T P Y WVGN Q
Sbjct: 144 DPLPLDPYSGVYLVLTSPDVQVEEFCRAVCGFH-YFTFASVVGVTVP--YAWVGNSATQ 199
>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
Length = 1369
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 420 FVDEESERGSVPEVVSLEVGQDKLEPSFLVGTVWREEATIHHGAREI-VEVSPADHRSTH 244
F+ R VPE V+ + ++ SFL TVW+ +H RE V VS ++ H
Sbjct: 694 FIQSSDRRDIVPENVAKNWFDELVDRSFLQPTVWQGRYVMHDLIREFSVAVSSNEYYVFH 753
>11_01_0199 +
1563483-1563572,1563673-1563852,1564091-1564402,
1564753-1564800,1565205-1565438,1565632-1566219
Length = 483
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Frame = +3
Query: 504 GDSAEVIDWVKNPVPIDRYRQQQCKFTMPSICRPSFCGPLTGTHNQLSYYMTICNTCPRN 683
G + ++W P R+R+ + + FC S + +ICN C
Sbjct: 121 GSTTPSMEWSSGRTPRMRFRRAKDVTVNGFTVKVKFCETCLRYRPPRSSHCSICNNCVEK 180
Query: 684 Y----PWVGNPLG 710
+ PWVG +G
Sbjct: 181 FDHHCPWVGQCIG 193
>10_08_1025 -
22391267-22391767,22392641-22392736,22392838-22393106,
22393257-22393431,22393503-22393718,22393819-22393926,
22394020-22394544,22394631-22394819,22394924-22395041,
22395172-22395437,22395521-22395658
Length = 866
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 314 SRQTVPTRKDGSSLS*PTSRDTTSGTEPRSDSSSTNGSFRQTPPSNALLS 463
S PT ++ + TS T PR+ SS+ N + PP+ LL+
Sbjct: 764 SPAAAPTISSSTTTTTGNGNGETSSTPPRNSSSNNNNADELLPPNGCLLT 813
>09_03_0103 - 12383585-12384700
Length = 371
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +1
Query: 142 NCLD*SRSMALHSSPRIYSGLHYSSMPNCVNSWTVGAPMISWRDLNNF 285
+CL S H Y G H+ S C +T+G SWR + +F
Sbjct: 151 HCLGFCPSTKEHKVVHFYLGAHFDSFNVCCEIFTIGDK--SWRQIGSF 196
>02_01_0308 + 2064510-2065613
Length = 367
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = +3
Query: 525 DWVKNPVPIDRYRQQQCKFTMPSICRPSFCGPLTGTHNQLSYYMTI 662
DWV PIDRY C+ P P C G + + Y +
Sbjct: 152 DWVTTRGPIDRYNDWHCQSLPPPPYHPYSCS-FVGANGAIGGYAVV 196
>06_01_0235 + 1789037-1790077
Length = 346
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +3
Query: 540 PVPIDRYRQQQCKFTMPSICRPSFCGPLTGTHNQLSYYMTICNTCPRNYPWVGN 701
P+P+D T P + +FCG + G H ++ + T P Y WVGN
Sbjct: 166 PLPVDS-SGVYLVLTSPEVVVENFCGQVCGFH-YFTFPSVVGYTLP--YAWVGN 215
>07_03_0563 -
19542116-19542217,19542631-19542712,19543823-19544595,
19545207-19545296,19545612-19545689,19546112-19546207,
19546285-19546365,19546587-19546787,19546875-19546967,
19547052-19547116,19547684-19547715,19548844-19548956
Length = 601
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 350 SLS*PTSRDTTSGTEPRSD--SSSTNGSFRQTPPSNALLSDSWISL 481
SL+ T D + T PRS ++ST GS Q+P ++ D WI++
Sbjct: 306 SLTISTPLDPLTLTMPRSKLIATSTVGSSAQSPTKSSTAQDLWIAI 351
>02_05_0795 - 31792231-31794780
Length = 849
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 209 IPPCPTASIPGPWVLL*SAG 268
+PPCP S+P P VL+ AG
Sbjct: 260 LPPCPPPSLPPPSVLIVGAG 279
>12_02_0427 +
18973358-18973364,18974195-18974300,18974763-18974855,
18974978-18975173,18975362-18975540,18975882-18976135,
18976378-18976538,18976633-18976800
Length = 387
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 462 QIHGYH*QLK*CLHGDSAEVIDWVKNPVPI 551
Q +GY L CLHG+ E+ W K+ VP+
Sbjct: 158 QAYGY---LNICLHGNMEELRPWCKSKVPL 184
>05_07_0179 +
28195929-28195954,28195966-28196286,28196397-28196664,
28203206-28203667
Length = 358
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 516 EVIDW-VKNPVPIDRYRQQQCKFTMPSICRPSFCGPLTGTHNQLS 647
EV+ W K P+P+ CK+ + + RP PLT Q++
Sbjct: 268 EVLSWDCKIPLPVTPQSLPSCKWDIYAGYRPGLLSPLTFASQQIN 312
>04_03_0465 -
16227552-16227842,16227993-16228217,16228342-16228477,
16229756-16229974,16230269-16230569,16231865-16232108
Length = 471
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 289 CSMVDGCFFTPDRTDEEGWFKFILTNFERHYLGNRAPFGF-FVHEWFISSNPAIKRAFVR 465
C ++ F + EEGW++ + T +Y +RA G+ + F + + R FV
Sbjct: 165 CKRLETSLFISEYEQEEGWWRDLYTYVGLNYARDRAVEGYLWSCLVFYEKDLSFTRTFVA 224
Query: 466 FMDIINNLND 495
M ++ L D
Sbjct: 225 KMILLVTLMD 234
>02_05_0572 +
30082734-30082739,30083136-30083383,30083695-30083888,
30083994-30084136
Length = 196
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/62 (22%), Positives = 28/62 (45%)
Frame = +3
Query: 168 GLTLFTTNLFRTALFLHAQLRQFLDRGCSYDQLERPQQFPLLHGGWLLLHARPYRRGRMV 347
GL ++FR ++ H RQF G +++ + G W++ P+ G++
Sbjct: 135 GLVARLASMFRASITYHHCHRQFAVVGMKTNKVHHVLTYEDQEGDWMMAGDVPWEYGKLA 194
Query: 348 QV 353
Q+
Sbjct: 195 QL 196
>08_02_1023 -
23710825-23710950,23711037-23711120,23711367-23711492,
23711593-23711712,23712046-23712153,23712243-23712395,
23712505-23712600,23712716-23712800,23713278-23714268,
23714870-23714915,23715806-23715964,23716516-23716651,
23716734-23716900,23717366-23717696,23717827-23718062,
23718326-23718514
Length = 1050
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 220 PNCVNSWTVGAPMISWRDLNNFPCSMVDGCFFT 318
PN V+S +G I + + N PC+ V G FT
Sbjct: 331 PNTVSSPILGPSKILVKKVANMPCNEVSGASFT 363
>06_01_0499 - 3581145-3582425
Length = 426
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 134 WPTTALTNPGLWPYTLHHESIQDCIIPPC 220
W TTA PG+ + + E D PPC
Sbjct: 259 WITTAAPTPGMLRFDVRREVFDDFPSPPC 287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,869,395
Number of Sequences: 37544
Number of extensions: 538021
Number of successful extensions: 1507
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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