Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0743
(754 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 7e-15
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08) 77 1e-14
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 1e-13
SB_7303| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_9549| Best HMM Match : TP2 (HMM E-Value=2.9) 31 1.3
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_40746| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0) 29 3.1
SB_51910| Best HMM Match : ig (HMM E-Value=4.9e-05) 29 5.4
SB_41280| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_20139| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 78.2 bits (184), Expect = 7e-15
Identities = 31/72 (43%), Positives = 46/72 (63%)
Frame = +2
Query: 11 MAHFASIPASAIKGVRIPFLQMSGNTSFQVMADFDLLYDCTWPTTALTNPGLWPYTLHHE 190
+ F + ++G R PFLQ+ G+ F+V+ D ++D + PT T+P LWPYTL +
Sbjct: 1659 LKEFGGVNEKDVRGFRAPFLQIGGDNQFKVLHDHSFMFDSSMPTWR-TDPPLWPYTLDYS 1717
Query: 191 SIQDCIIPPCPT 226
S QDC+IPPCP+
Sbjct: 1718 SAQDCVIPPCPS 1729
>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
Length = 893
Score = 77.4 bits (182), Expect = 1e-14
Identities = 32/69 (46%), Positives = 43/69 (62%)
Frame = +2
Query: 20 FASIPASAIKGVRIPFLQMSGNTSFQVMADFDLLYDCTWPTTALTNPGLWPYTLHHESIQ 199
F + A +KG R PFLQ+ G+ F+ + D Y+ + PT NP LWPYTL + S Q
Sbjct: 692 FGGVNAEDVKGFRAPFLQIGGDNEFKALHDNKFTYETSMPTQQ-NNPPLWPYTLEYASTQ 750
Query: 200 DCIIPPCPT 226
+C+IPPCPT
Sbjct: 751 ECVIPPCPT 759
Score = 41.1 bits (92), Expect = 0.001
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +2
Query: 155 NPGLWPYTLHHESIQDCIIPPCPT 226
NP WPY+L + S Q+C+I PCPT
Sbjct: 784 NPPFWPYSLDYASTQECVILPCPT 807
>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 74.1 bits (174), Expect = 1e-13
Identities = 32/75 (42%), Positives = 47/75 (62%)
Frame = +2
Query: 29 IPASAIKGVRIPFLQMSGNTSFQVMADFDLLYDCTWPTTALTNPGLWPYTLHHESIQDCI 208
+P+S IKG R PFL+++ + + + + YD +WPT NP ++PYTL + SIQDC
Sbjct: 207 LPSSTIKGFRAPFLEITEH-QYPGLYTNNFTYDLSWPTGRYYNPPMYPYTLDYRSIQDCP 265
Query: 209 IPPCPTASIPGPWVL 253
+ CP S PG WV+
Sbjct: 266 VGKCPVMSYPGLWVV 280
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +3
Query: 516 EVIDWVKNPVPIDR---YRQQQCKFT-MPSICRPSFCGPLTGTHNQLSYYMTICNTCPRN 683
+VI+W+KNP ++ + C P P+ C T +YM C+ CP++
Sbjct: 465 QVIEWMKNPQDVNGANGFPAWDCLTRPKPRCTTPNVCHYTTPQ----DFYMPTCSDCPKH 520
Query: 684 YPWVGNPLGQ 713
+P NP G+
Sbjct: 521 FPSPTNPDGE 530
>SB_7303| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 42.3 bits (95), Expect = 4e-04
Identities = 17/52 (32%), Positives = 31/52 (59%)
Frame = +1
Query: 355 ILTNFERHYLGNRAPFGFFVHEWFISSNPAIKRAFVRFMDIINNLNDVFMVT 510
+L NF+ HY N+APFG H + S + A +F+ ++ + +DV+++T
Sbjct: 2 MLLNFQYHYHSNKAPFGLHAHSAWFSQSTGHMEALRKFLTLVASRDDVWVLT 53
>SB_9549| Best HMM Match : TP2 (HMM E-Value=2.9)
Length = 241
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/58 (36%), Positives = 26/58 (44%)
Frame = -2
Query: 423 PFVDEESERGSVPEVVSLEVGQDKLEPSFLVGTVWREEATIHHGAREIVEVSPADHRS 250
P DE GS+PEV S E+ D+ FL EE + H A + PA RS
Sbjct: 184 PITDESPVCGSIPEVESHELYVDEKVTRFLHNMRLEEERGVEHVAEGL---GPAKRRS 238
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 77 SGNTSFQVMADFDLLYDCTWPTTALTNPGLWPYTLHHES 193
SG SF + D + CT A + G WP L+H S
Sbjct: 3050 SGTLSFSIKGRLDGQFQCTLDARANADVGDWPALLYHVS 3088
>SB_40746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 284
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 368 SRDTTSGTEPRSD-SSSTNGSFRQTPPSNALLSDSWISL 481
SR GT PR SSST +FR++ S+ L D W+ L
Sbjct: 78 SRHAGQGTNPRKCYSSSTIKAFRKSSTSSRLSDDLWMEL 116
>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 3312
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 77 SGNTSFQVMADFDLLYDCTWPTTALTNPGLWPYTLHHES 193
SG SF + D + CT A + G WP L+H S
Sbjct: 1500 SGTLSFGIKGRLDGQFQCTLDARANADVGDWPALLYHVS 1538
>SB_51910| Best HMM Match : ig (HMM E-Value=4.9e-05)
Length = 562
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 504 GDSAEVIDWVKNPVPIDRY 560
G + V+ W KN VP+DRY
Sbjct: 439 GTPSPVVTWTKNGVPLDRY 457
>SB_41280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +1
Query: 235 SWTVGAPMISWRDLNNFPCSMVDGCFFTPDRTDEEGWFKFILTNFERHY 381
SWT P WR L P ++ D F+ W K+ LTN R Y
Sbjct: 350 SWTPDLPR--WRSL---PSNLEDELFYDDYPDILRAWSKYRLTNMSRRY 393
>SB_20139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +2
Query: 329 PTRKDGSSLS*PTSRDTTSGTEPRSDSSSTNGSFR 433
PTR S PT+R T P++DSS+TN S R
Sbjct: 130 PTRPQTDS---PTNRLIHKPTRPQTDSSTTNSSTR 161
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,865,817
Number of Sequences: 59808
Number of extensions: 612802
Number of successful extensions: 1562
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1556
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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