Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0743
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   7.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.4  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 392 EPRSDSSSTNGSFRQTPPSNA 454
           +P SDS+ST      TPP+++
Sbjct: 351 KPISDSTSTTTETVNTPPASS 371


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 368 SRDTTSGTEPRSDSSSTNGSFRQTPPSNALLS 463
           ++   S   P+S  SST  S  +   S AL+S
Sbjct: 347 AKQMASPEPPKSSESSTGSSIPKLNLSTALMS 378


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +2

Query: 338 KDGSSLS*PTSRDTTSGTEPRSDSSSTNGSFRQTPPSNALLSDSWISLTT 487
           K GS+ +   +  TT+G      ++S  G+   TP +    S++  ++TT
Sbjct: 207 KAGSTDASTPATVTTTGATTTLPAASATGTGPATPSAVVATSNATAAMTT 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,079
Number of Sequences: 438
Number of extensions: 5772
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)