Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0743
         (754 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51800.1 68418.m06423 expressed protein                             33   0.27 
At1g31460.1 68414.m03852 expressed protein                             31   0.62 
At5g01280.1 68418.m00037 expressed protein                             31   0.82 
At2g34510.1 68415.m04239 expressed protein contains Pfam profile...    30   1.4  
At1g14345.1 68414.m01700 expressed protein contains one transmem...    30   1.4  
At5g61000.1 68418.m07652 replication protein, putative similar t...    28   5.8  
At2g28880.1 68415.m03510 para-aminobenzoate (PABA) synthase fami...    28   7.7  

>At5g51800.1 68418.m06423 expressed protein
          Length = 972

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 35/108 (32%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
 Frame = +2

Query: 155 NPGLWPYTLHHESIQDCIIPPC--PTASIPG-PWVLL*SAGETSTISLAPWWMVASSRQT 325
           NP L  +  HH   Q  +  P   PT S PG P +       TS+    P W    S  T
Sbjct: 31  NPSLLHH--HHHHHQSFLPTPIFIPTVSSPGAPVIPKRPRFSTSSGLSPPQWKALPSPST 88

Query: 326 VPTRKDGSSLS*P-TSRDTTSGTEPRSDS----SSTNGSFRQTPPSNA 454
           VPT    SS   P T+  T S TE    S     +TN   +Q P + +
Sbjct: 89  VPTASTISSSPTPSTAVVTASSTETAGSSPPGQEATNSEKQQQPKTES 136


>At1g31460.1 68414.m03852 expressed protein
          Length = 301

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -2

Query: 423 PFVDEESERGSVPEVVSLEVGQDKLEPSFLVGTVWR 316
           P  D E E+ S P+  S     DKL PS L+G++WR
Sbjct: 183 PSTDSEPEKKSKPK--SKSSWFDKLSPSKLIGSIWR 216


>At5g01280.1 68418.m00037 expressed protein
          Length = 460

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
 Frame = +2

Query: 308 ASSRQTVPTRKDGSSL---S*PTSRDTTSGTEPRSDSSSTNGSFR--QTPPSNALLSDSW 472
           ++SR   PTRK  +     S PTSR T++ T     SSST  S R    P S++    S 
Sbjct: 93  STSRPPTPTRKSKTPAKRPSTPTSRATSTTTRATLTSSSTTSSTRSWSRPSSSSGTGTSR 152

Query: 473 ISLT 484
           ++LT
Sbjct: 153 VTLT 156


>At2g34510.1 68415.m04239 expressed protein contains Pfam profile
           PF04862: Protein of unknown function, DUF642
          Length = 401

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +2

Query: 353 LS*PTSRDTTSGTEPRSDSSSTNGSFRQTPPSNALLSDSWISLTT*MMSSW 505
           LS   + D+   T P  D    NG F +TPPSN    D+ I  T+  + SW
Sbjct: 21  LSIVAAADSAGKTSPVEDGLVVNGDF-ETPPSNGFPDDAIIEDTS-EIPSW 69


>At1g14345.1 68414.m01700 expressed protein contains one
           transmembrane domain
          Length = 196

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -3

Query: 737 SLTELSLLLSKRISYPG--VIPGTRVANRHVVRQLIMSS 627
           S+   SLLLS   S+P   + P T++  RH+ R L+ SS
Sbjct: 15  SVVRKSLLLSTTFSFPASSLSPSTKLPQRHIQRLLLASS 53


>At5g61000.1 68418.m07652 replication protein, putative similar to
           replication protein A1 [Oryza sativa] GI:2258469;
           contains InterPro entry IPR004365: OB-fold nucleic acid
           binding domain
          Length = 629

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 235 SWTVGAPMISWRDLNNFPCSMVDGCFFTPDRTDEEG 342
           +WT+   + +   + N+  +  +GC F  + TDEEG
Sbjct: 193 NWTIKVRVTNKGVMRNYKNARGEGCVFNVELTDEEG 228


>At2g28880.1 68415.m03510 para-aminobenzoate (PABA) synthase family
           protein similar to PABA synthase from Streptomyces
           griseus [SP|P32483], Streptomyces pristinaespiralis
           [gi:1575336]; contains Pfam profiles  PF00425:
           chorismate binding enzyme, PF00117: glutamine
           amidotransferase class-I, PF04715: Anthranilate synthase
           component I, N terminal region
          Length = 919

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 346 FKFILTNFERHYLGNRAPFGFFVHEWFISSNPAIKRAFVRF 468
           ++  LT   R  +GN  P G ++H      NPA   AF+ F
Sbjct: 664 YELCLTTQNRRKIGNADPLGLYLH--LRERNPAPYAAFLNF 702


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,075,398
Number of Sequences: 28952
Number of extensions: 419221
Number of successful extensions: 1195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)