Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0742
         (640 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     24   0.93 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   0.93 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   0.93 
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    24   0.93 
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   1.6  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   5.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.6  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   8.7  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 390 NDYVQPIRLQSSYHKDYNYDGYRLTATGWG 479
           N ++Q  +LQ  YH   NY+   + + G+G
Sbjct: 52  NHHIQQQQLQYGYHNHQNYNS-NVLSNGYG 80


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 390 NDYVQPIRLQSSYHKDYNYDGYRLTATGWG 479
           N ++Q  +LQ  YH   NY+   + + G+G
Sbjct: 52  NHHIQQQQLQYGYHNHQNYNS-NVLSNGYG 80


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 390 NDYVQPIRLQSSYHKDYNYDGYRLTATGWG 479
           N ++Q  +LQ  YH   NY+   + + G+G
Sbjct: 52  NHHIQQQQLQYGYHNHQNYNS-NVLSNGYG 80


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 390 NDYVQPIRLQSSYHKDYNYDGYRLTATGWG 479
           N ++Q  +LQ  YH   NY+   + + G+G
Sbjct: 52  NHHIQQQQLQYGYHNHQNYNS-NVLSNGYG 80


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
 Frame = +1

Query: 1   VAIAGVAVVSADPALTF--------VENVRAGARIVSGWEA---EEGQFPYQ-LSLRMVN 144
           +AIAG+  VSA PA  +        VE++    R+V+ + A    +G  P Q + L+ V 
Sbjct: 5   IAIAGILAVSAAPAEFYESRYDHLDVESILNNRRMVNYYAACLLSKGPCPPQGVDLKRVL 64

Query: 145 PEGAVNAC 168
           PE     C
Sbjct: 65  PEALQTNC 72


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 116 GNCPSSASHPDTILAPALTFSTKVRAGSADTTATPAI 6
           G  PSS+   + I  P + +S   +AGS  T  T  +
Sbjct: 159 GYHPSSSYPANEISCPQVQWSATPQAGSTPTYQTQGL 195


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 539 TNAFCSEIFVINNIVQDSTICASGYNVTSQS 631
           TNAF S+   IN IVQ+      G  V  +S
Sbjct: 878 TNAFGSDDTSINMIVQEVPEVPYGLKVLDKS 908


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -3

Query: 290 RLENNGGPCHVDVPALMTMVTRVAVQ 213
           R +  GGP H   PAL       AVQ
Sbjct: 295 RADGAGGPLHDHRPALAQQRRVAAVQ 320


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,238
Number of Sequences: 336
Number of extensions: 3171
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)