Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0742
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    40   0.001
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    33   0.23 
AL132848-5|CAB60389.2|  702|Caenorhabditis elegans Hypothetical ...    32   0.30 
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    29   2.1  
Z99942-6|CAI79199.1|  119|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf (tbp-asso...    28   4.9  
AC006656-3|AAF39882.1|  549|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z35663-9|CAA84730.1|  219|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z35598-7|CAA84650.2|  325|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U41270-2|AAA82440.1|  298|Caenorhabditis elegans Cell-death-rela...    27   8.6  
AY303578-1|AAP57300.1|  298|Caenorhabditis elegans cell death-re...    27   8.6  
AL031627-16|CAA20968.1|  262|Caenorhabditis elegans Hypothetical...    27   8.6  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 20/48 (41%), Positives = 28/48 (58%)
 Frame = +1

Query: 73  ARIVSGWEAEEGQFPYQLSLRMVNPEGAVNACGATIIHSDWGLTAAHC 216
           AR+V G+E   G FP+  +LR  N     + CGA+I+     +TAAHC
Sbjct: 25  ARVVGGFETVPGAFPWTAALR--NKATKAHHCGASILDKTHLITAAHC 70



 Score = 31.9 bits (69), Expect = 0.40
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +3

Query: 306 HPLYDESIQQIVQPHDIGLIKFGR-SLVFNDYVQPIRLQSSYHKDYNY-DGYRLTATGWG 479
           +PLY +     +  HDI +++     + FN+Y QPI L S   KD+ Y  G +   +GWG
Sbjct: 107 YPLYKD-----IFSHDIAILEIPYPGIEFNEYAQPICLPS---KDFVYTPGRQCVVSGWG 158


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +1

Query: 76  RIVSGWEAEEGQFPYQLSLRMVNPEGAVNACGATIIHSDWGLTAAHC 216
           RI+ G   ++G   +   L      G    CGAT+I   W +TAAHC
Sbjct: 37  RIIGGNSIDDGA-NWMAKLVSYGDNGQGILCGATVIDDFWLVTAAHC 82


>AL132848-5|CAB60389.2|  702|Caenorhabditis elegans Hypothetical
           protein Y47H10A.1 protein.
          Length = 702

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 233 P*SSEPVRQHDTARRCFRDDRLFKPPTLRRIDTADCTTSRHRPHQVWTLP 382
           P S +P+  H+  ++C  + RLF+ P     +++     R + H VW  P
Sbjct: 194 PLSCQPIYFHEERQKCLDEKRLFEDPQFPANNSSIYVKVRPKDHIVWKRP 243


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 79  IVSGWEAEEGQFPYQLSLRMVNPEGAVNACGATIIHSDWGLTAAHC 216
           I++G+ A         S+    P+G  N CG  +I     +T+AHC
Sbjct: 17  IINGFSANSFDTLSLASVITRFPDGTTNVCGGVLIAPSIVITSAHC 62


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/49 (30%), Positives = 31/49 (63%)
 Frame = +1

Query: 76  RIVSGWEAEEGQFPYQLSLRMVNPEGAVNACGATIIHSDWGLTAAHCTA 222
           R++ G E+    +P+  ++++++  G  + CG ++I  ++ LTAAHC A
Sbjct: 57  RLIGGSESSPHSWPW--TVQLLSRLGH-HRCGGSLIDPNFVLTAAHCFA 102


>Z99942-6|CAI79199.1|  119|Caenorhabditis elegans Hypothetical
           protein H13N06.7 protein.
          Length = 119

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 278 CFRDDRLFKPPTLRRIDTADCTTSRHRPHQVWTL 379
           CF+  RL    + R  DT++C    + P + WTL
Sbjct: 52  CFKSSRLENVKSCREADTSNCAAPEY-PTRKWTL 84


>AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 2
           protein.
          Length = 1086

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 353 VVRLYNLLYRFVVKWVV*IICRLENNGGPCHVDV-PALMTMV 231
           VV   NL   FV++ +   I RL    G CH DV P L+ ++
Sbjct: 779 VVTAQNLQQYFVMQALPQAIARLRRQSGECHEDVQPFLLDLI 820


>AC006656-3|AAF39882.1|  549|Caenorhabditis elegans Hypothetical
           protein H12I13.3 protein.
          Length = 549

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 252 YVNMTRPAVVFETTDY-LNHPLYDESIQQIV 341
           Y +M      F+ +DY  NHPLYDES ++++
Sbjct: 440 YEDMGNMKEWFDFSDYPKNHPLYDESNKKVI 470


>Z35663-9|CAA84730.1|  219|Caenorhabditis elegans Hypothetical
           protein T04A8.11 protein.
          Length = 219

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 91  WEAEEGQFPYQLSLRMVNPEGAVNACGATIIHSDWGLTA 207
           ++AE+G+  Y+ + RM+   G V      +IH  +GL A
Sbjct: 32  YDAEKGEKKYKSTKRMIEARG-VEEVHTELIHEQYGLAA 69


>Z35598-7|CAA84650.2|  325|Caenorhabditis elegans Hypothetical
           protein F10F2.3 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 426 YHKDYNYDGYRLTATGWGRTWTNGT 500
           Y  + NY    L AT WG TW +G+
Sbjct: 97  YFLEQNYTEAELYATTWGDTWGSGS 121


>U41270-2|AAA82440.1|  298|Caenorhabditis elegans Cell-death-related
           nuclease protein4 protein.
          Length = 298

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 282 FETT-DYLNHPLYDESIQQIVQPHDIGLIKFGRSLVFNDYVQPI 410
           FETT D  N     E IQ  +  +D+   K    + FN YV+P+
Sbjct: 16  FETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPV 59


>AY303578-1|AAP57300.1|  298|Caenorhabditis elegans cell
           death-related nuclease 4 protein.
          Length = 298

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 282 FETT-DYLNHPLYDESIQQIVQPHDIGLIKFGRSLVFNDYVQPI 410
           FETT D  N     E IQ  +  +D+   K    + FN YV+P+
Sbjct: 16  FETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPV 59


>AL031627-16|CAA20968.1|  262|Caenorhabditis elegans Hypothetical
           protein Y102A5C.27 protein.
          Length = 262

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = +3

Query: 333 QIVQPHDIGLIKFGRSLVFNDYVQPIRL-QSSYHKDYNY---DGYRLTAT 470
           Q VQ +++    FG    F++   P+   +S+YH D+NY   + YR+ ++
Sbjct: 9   QAVQANNLNTDHFGTCGTFDNSRAPVTSHRSTYHNDHNYHYNNNYRIQSS 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,735,778
Number of Sequences: 27780
Number of extensions: 301733
Number of successful extensions: 778
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)