Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0741
         (832 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     24   1.3  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   1.3  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   1.3  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    24   1.3  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    23   3.0  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   3.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.1  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 404 NDYVQPIRLQSSYHKDYNYDGYRLTATGWG 493
           N ++Q  +LQ  YH   NY+   + + G+G
Sbjct: 52  NHHIQQQQLQYGYHNHQNYNS-NVLSNGYG 80


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 404 NDYVQPIRLQSSYHKDYNYDGYRLTATGWG 493
           N ++Q  +LQ  YH   NY+   + + G+G
Sbjct: 52  NHHIQQQQLQYGYHNHQNYNS-NVLSNGYG 80


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 404 NDYVQPIRLQSSYHKDYNYDGYRLTATGWG 493
           N ++Q  +LQ  YH   NY+   + + G+G
Sbjct: 52  NHHIQQQQLQYGYHNHQNYNS-NVLSNGYG 80


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 404 NDYVQPIRLQSSYHKDYNYDGYRLTATGWG 493
           N ++Q  +LQ  YH   NY+   + + G+G
Sbjct: 52  NHHIQQQQLQYGYHNHQNYNS-NVLSNGYG 80


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 484 RLGKNLDQCTAPENMNWVFL 543
           R+ K+L+Q  AP+ + WV L
Sbjct: 90  RVAKSLNQVFAPQLLLWVLL 109


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 130 GNCPSSASHPDTILAPALTFSTKVRAGSADTTATPAIATRS 8
           G  PSS+   + I  P + +S   +AGS  T  T  + + S
Sbjct: 159 GYHPSSSYPANEISCPQVQWSATPQAGSTPTYQTQGLLSPS 199


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 553 TNAFCSEIFVINNIVQDSTICASGYNVTSQS 645
           TNAF S+   IN IVQ+      G  V  +S
Sbjct: 878 TNAFGSDDTSINMIVQEVPEVPYGLKVLDKS 908


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,482
Number of Sequences: 336
Number of extensions: 4096
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22829180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)