Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0741
         (832 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359...    30   2.0  
06_01_0421 - 3000486-3000595,3000909-3001148,3001659-3001722,300...    29   6.0  

>06_01_0503 -
           3596664-3596837,3597647-3598069,3598362-3598595,
           3598720-3598993,3599390-3599523,3599572-3599634,
           3599759-3599846,3599919-3599989,3600898-3601010,
           3601836-3602004,3602580-3602671,3602819-3603295,
           3603736-3604090
          Length = 888

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 86  RQDRIRMGSRRRTVPLPAVTAHGEP*GSSQRLWSH 190
           R+  +R+  RRR  PLPA  A   P   S ++WS+
Sbjct: 5   RESLVRLIGRRRRSPLPAALALAVPPSRSLQVWSN 39


>06_01_0421 - 3000486-3000595,3000909-3001148,3001659-3001722,
            3001969-3002274,3002365-3002579,3003047-3003341,
            3003487-3003651,3003745-3004341,3004855-3004941,
            3005022-3005342,3006218-3008242
          Length = 1474

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -1

Query: 301  LENNGGPCHVDCTGSETMVTRVAVQ*AAV-SPQSLWMMVAPQALTAPSGF 155
            ++ N GPC  +   +E ++ R+ +  AAV S  +L M++ P    +P GF
Sbjct: 1117 VDKNAGPCFYNFAATEWLIQRLELMSAAVLSFSALVMVILPPGTFSP-GF 1165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,845,351
Number of Sequences: 37544
Number of extensions: 492913
Number of successful extensions: 1140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)