Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0741
         (832 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g47900.1 68414.m05334 expressed protein                             29   2.9  
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ...    29   3.8  

>At1g47900.1 68414.m05334 expressed protein
          Length = 1054

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -1

Query: 124  CPSSASHPDTILAPALTFSTKVRAGSADTTATPAIATR 11
            CPS +   DT  +P+   S   R+GS+ T ATP  A+R
Sbjct: 1006 CPSDSETSDTTTSPSRVGSRLSRSGSS-TNATPEKASR 1042


>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
           WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
           contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
          Length = 711

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 77  QGRRQDRIRMGSRRRTVPLPAVTAHGEP*GSSQRLWSHH--HPQRLGTHG 220
           QG +Q +   G  ++ +P+P +  H  P  S   L  HH   P ++  HG
Sbjct: 569 QGYQQQQQHQGHPQQMLPMPNMPHHQLPPSSHMPLHPHHLPRPMQMPPHG 618


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,583,177
Number of Sequences: 28952
Number of extensions: 364760
Number of successful extensions: 848
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)