Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0740
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc...    26   5.3  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    26   7.0  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    26   7.0  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    26   7.0  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   9.3  

>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 164

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 231 LLNDCLDLVASFRDIAVPKRWRASRFNNCIAHNLAVTTAIK 353
           LLN    + A+   +  P+   A+RF + + H  A+T  I+
Sbjct: 4   LLNYLQSIAATSEKLLEPENPNAARFTDAVLHTHAITDLIR 44


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 359 CKLYRCGNG*VMCNTVIETTRTPPFRYGNVSKTRNQVKTI 240
           CKLY   NG  +C  V   T+T    + N+   R + K I
Sbjct: 409 CKLYWQSNGDYLCVKVDRHTKTKKSTFSNLEIFRIREKNI 448


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 360 YTRKNIPSNKEAESILAVTNVMDCFLDSFV 449
           Y +KN PS K  +  LAV NV     D+ +
Sbjct: 513 YVKKNFPSTKLLDYALAVENVTTSKKDNLI 542


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 324 HNLAVTTAIKFAYTRKNIPSN-KEAESILAVTNV 422
           H +  T  +KFA   +N+P + ++AE   AVTNV
Sbjct: 443 HTMETTNTLKFASRAQNLPQDIRQAE---AVTNV 473


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -2

Query: 638 SLDRCSWCRYVPGQLPXXXXXXRKC 564
           SL   SWC +  G LP       KC
Sbjct: 499 SLSELSWCYFKTGNLPKAISTVEKC 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,789,834
Number of Sequences: 5004
Number of extensions: 51057
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)