Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0740
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  

>SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1751

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -2

Query: 416  GDCKDRFSFFI*WYIFSCICKLYRCGNG*VMCNTVIETTRT 294
            G+C+++ SF +   +   +C    C N  V  NT++ET+R+
Sbjct: 1307 GECQEKMSFVVLCCVV--LCNNVSCRNDTVRNNTIMETSRS 1345


>SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 842

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 738 GLFCHDHGRQRHQYCCEDL 682
           G FCH H   R   CC+DL
Sbjct: 601 GSFCHIHPTDRFAVCCKDL 619


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,914,212
Number of Sequences: 59808
Number of extensions: 385168
Number of successful extensions: 847
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)