Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0740
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   1.1  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    24   1.4  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   7.4  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/55 (25%), Positives = 29/55 (52%)
 Frame = -3

Query: 640 IVWTDAHGVGMFQVSYLNDSNNNESVRSAWRSKRYYSLFPRVSSFYIHCTIVLLL 476
           +VW  +  +G   V  LN++ +    +  + +  +  ++  +SSFYI C I++ L
Sbjct: 309 LVWAISAAIGSPIVLGLNNTPDRTPDQCLFYNTDFI-IYSSLSSFYIPCIIMVFL 362


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 657 TSDPPCSHEGLRSSTDG 707
           T D PC H GL S  DG
Sbjct: 110 TFDIPCEHRGLVSIIDG 126


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 129 YILI*LKFNNICIYRVPVSKLFP 61
           + L+  K +N    RVP  K+FP
Sbjct: 229 FSLVFTKIDNEIFNRVPFDKIFP 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,321
Number of Sequences: 438
Number of extensions: 3465
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)