Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0740
         (786 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62260.2 68416.m06995 protein phosphatase 2C, putative / PP2C...    28   8.1  
At3g62260.1 68416.m06994 protein phosphatase 2C, putative / PP2C...    28   8.1  
At3g56810.1 68416.m06318 expressed protein                             28   8.1  

>At3g62260.2 68416.m06995 protein phosphatase 2C, putative / PP2C,
           putative phosphoprotein phosphatase (EC 3.1.3.16)
           1A-alpha - Homo sapiens, PIR:S22423
          Length = 384

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = -3

Query: 382 DGIFFLVYANFIAVVTAKLCAIQLLKR-LARHLFGTAMSRKLATKS--RQSFNNILSLIC 212
           D  F ++  + I  V     A+ +++R L RH   T  +R+L  ++  R SF+N+ +++ 
Sbjct: 288 DDEFLVIGCDGIWDVLTSQEAVSIVRRGLNRHNDPTRCARELVMEALGRNSFDNLTAVVV 347

Query: 211 CF 206
           CF
Sbjct: 348 CF 349


>At3g62260.1 68416.m06994 protein phosphatase 2C, putative / PP2C,
           putative phosphoprotein phosphatase (EC 3.1.3.16)
           1A-alpha - Homo sapiens, PIR:S22423
          Length = 383

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = -3

Query: 382 DGIFFLVYANFIAVVTAKLCAIQLLKR-LARHLFGTAMSRKLATKS--RQSFNNILSLIC 212
           D  F ++  + I  V     A+ +++R L RH   T  +R+L  ++  R SF+N+ +++ 
Sbjct: 287 DDEFLVIGCDGIWDVLTSQEAVSIVRRGLNRHNDPTRCARELVMEALGRNSFDNLTAVVV 346

Query: 211 CF 206
           CF
Sbjct: 347 CF 348


>At3g56810.1 68416.m06318 expressed protein 
          Length = 332

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -1

Query: 705 HQYCCEDLHGYRAGR*YVINKL*FGQMLMVSVCSRSATSTIVTTTKVCDPL 553
           H+YCC+D   Y+     +I +       +  V S+ +TST  TTT+ C  L
Sbjct: 184 HEYCCKDNKPYKVNNINLITRP--DHYSIHDVISKRSTST--TTTESCGTL 230


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,318,321
Number of Sequences: 28952
Number of extensions: 256915
Number of successful extensions: 544
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)