Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0739
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos... 42 1e-04
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2... 28 1.8
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch... 27 2.3
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c... 26 5.4
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 26 7.1
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 7.1
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 25 9.4
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 9.4
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 25 9.4
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 25 9.4
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 25 9.4
>SPAC1635.01 |||voltage-dependent anion-selective
channel|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 41.9 bits (94), Expect = 1e-04
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +1
Query: 259 SKFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKL 423
+ F K GLT ++ W T N L + + + ++ A GL + + TF+P T KT L
Sbjct: 58 TSFNDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSPATAAKTAIL 112
Score = 38.7 bits (86), Expect = 0.001
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 86 MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSL 256
MAPP YA + K ND+ + + G L ++T + +GV F ++ NQ++ G + G L
Sbjct: 1 MAPPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVF--NVSGNQDAKGVISGKL 56
Score = 33.9 bits (74), Expect = 0.027
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 516 YQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKD-FGGSIYQKVSDKLDC 692
++G+LAG +D QK S +GY + ++ N F S Y +VS ++
Sbjct: 142 HEGFLAGAEFGYDVQKGNVSNYAATIGYLASPLSVALQASNNLSVFRASYYHRVSSDVEA 201
Query: 693 G 695
G
Sbjct: 202 G 202
>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 540 HTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSD 680
H Q A F+K++ LGY+ AL++ DN + + K +D
Sbjct: 164 HDQAQALGAVFTKSDLELGYEMDQNALNSWFDNASQYAEANRTKFTD 210
>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 237
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 648 FGGSIYQKVSDKLDCGVT*SGRRVRPTHY 734
FGGS+YQ VS CG R +P HY
Sbjct: 94 FGGSLYQNVS---SCGFRDIHRPSKPRHY 119
>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 229 LVGGDSAGEFNTRLALGLQVEFENTKVIALAEDIIG 122
L GG G+F++ L G++ ++ T+ AE +IG
Sbjct: 72 LAGGRGKGQFDSGLRGGVRPVYDATEARMFAEQMIG 107
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 25.8 bits (54), Expect = 7.1
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Frame = +2
Query: 23 APICVEFSVK*YQFVNL*NTDMAPPY------YADLGKKANDVFSKGYHFGVFKLDLKTK 184
APIC EF+ Y F L T + YA G N S YH G D+ +
Sbjct: 288 APICFEFAK--YGFCEL-GTSCKNQHILQCTDYAMFGSCNNPQCSL-YH-GAVSADVPEQ 342
Query: 185 SESGVEFTSGITSNQESGKVFGS 253
+E+ + T+G + ++SG GS
Sbjct: 343 TEAPISKTAGSINPEDSGSEIGS 365
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 370 VTLEGTFAPQTGTKTGKLKTSFTNDTVAV 456
V++E P+ T +G+++T+F DT+ +
Sbjct: 3557 VSIEPLLKPEFFTGSGEVQTTFAKDTITI 3585
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 228 RKAERFLAAFLQICSERLWLDFHREVEHRQYI 323
++AE F+A+ + S L+ F +VEH + +
Sbjct: 247 KQAEEFIASLEHVPSRVLYTGFSHKVEHNETV 278
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 774 RRVLSSAYFAPTPNNVSAEPAVHFM*RRSPACQIPSGRLNR 652
R L S P ++A PAV + +P+ PSG N+
Sbjct: 142 REALLSQQIPPNQIGINAHPAVRQTPQPAPSPNTPSGNANQ 182
>SPAC3A12.17c |cys12|cys1b|cysteine synthase
Cys12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 268 QIWRKAAKNLSAFLVGGDSAG 206
+IWR+ A L AF+ G + G
Sbjct: 211 EIWRQCAGKLDAFIAGSGTGG 231
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 652 AVQSTRRYLTSWTAASHE 705
A+Q R YL++WT HE
Sbjct: 364 ALQLNRNYLSAWTLMGHE 381
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +2
Query: 707 WTAGSADTLFGVGAKYALDKTRLCTP 784
WT G+ + L G + ++ T +C P
Sbjct: 402 WTCGACNALLGDEGYFMIENTPICRP 427
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,259,659
Number of Sequences: 5004
Number of extensions: 66257
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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