Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0739
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055...    38   0.009
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182...    28   7.4  
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306...    28   9.7  
07_03_1669 + 28499143-28499409,28499915-28500055,28500528-285006...    28   9.7  

>01_05_0521 -
           22904656-22904962,22905132-22905340,22905432-22905521,
           22905624-22905734,22906401-22906468,22906611-22906653
          Length = 275

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 25/66 (37%), Positives = 32/66 (48%)
 Frame = +2

Query: 86  MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLPPN 265
           MAP  Y D+GKK  D+  + Y     K  L T +  GV  T+  T   ES  VFG L   
Sbjct: 1   MAPGLYTDIGKKTRDLLYRDYGTH-HKFTLTTCTPEGVTITAAGTRKNES--VFGELQTQ 57

Query: 266 LQ*KTM 283
           L+ K +
Sbjct: 58  LKNKKL 63



 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 534 GVHTQFDTQKAKFSKNNFALGYQSGDF--ALHTNVDNGKDFGGSIYQKV 674
           GV   FDT  + F+K N AL   + D   +LH N ++G     S Y  V
Sbjct: 142 GVDVAFDTATSNFTKYNAALSLTNSDLIASLHLN-NHGDTLIASYYHLV 189


>05_06_0213 +
           26414613-26414695,26416907-26417077,26417983-26418219,
           26418543-26418572,26419248-26419282,26421680-26421747,
           26423067-26423126,26423310-26423399,26423487-26423695,
           26424083-26424383
          Length = 427

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +3

Query: 534 GVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDN-GKDFGGSIYQKVS 677
           G    FDT    F+K N  L + + D      ++N G     S Y KVS
Sbjct: 296 GTDVAFDTATGDFTKYNAGLSHTTPDLTAALLLNNKGDSLAASYYHKVS 344


>09_02_0022 +
           3065644-3065953,3066048-3067162,3067261-3067437,
           3067535-3067648,3068614-3068718,3068930-3069064,
           3069148-3069203,3069277-3069382,3069515-3069631,
           3069705-3069831,3069915-3070141,3070164-3070727
          Length = 1050

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 434 NEVFNFPVL-VPVCGAKVPSRVTLRPAAILSWIVMSVANVLSVF 306
           ++V +  VL +  C   + SR+ L PA+ LSW   S    LS F
Sbjct: 606 DQVLDVKVLKISECAQSLSSRLVLTPASKLSWFGFSENGELSSF 649


>07_03_1669 +
           28499143-28499409,28499915-28500055,28500528-28500659,
           28501185-28501373,28501503-28501580,28502267-28502386,
           28502701-28502818,28503012-28503280,28503428-28503622,
           28503737-28503879,28504096-28504180,28504270-28504479,
           28504559-28504711,28504862-28504966,28505044-28505235
          Length = 798

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 717 PAVHFM*RRSPACQIPSGRLNRRNLYHCLRLCG 619
           PA + +       +I  GRL    L+HC+RL G
Sbjct: 633 PATNILLGEGRGFEIAQGRLGPGRLHHCMRLIG 665


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,905,459
Number of Sequences: 37544
Number of extensions: 457423
Number of successful extensions: 1285
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)