Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0739
(790 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical pr... 69 5e-12
AL022270-2|CAB63433.2| 952|Caenorhabditis elegans Hypothetical ... 29 3.8
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr... 28 6.6
U23139-10|AAN65328.1| 558|Caenorhabditis elegans Biotin protein... 28 6.6
U23139-9|AAN65327.1| 632|Caenorhabditis elegans Biotin protein ... 28 6.6
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ... 28 6.6
AY601658-1|AAS98223.1| 558|Caenorhabditis elegans biotin protei... 28 6.6
AY601657-1|AAS98222.1| 558|Caenorhabditis elegans biotin protei... 28 6.6
AY601656-1|AAS98221.1| 632|Caenorhabditis elegans biotin protei... 28 6.6
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ... 28 6.6
Z38112-7|CAA86231.3| 2089|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z35637-8|CAO82018.1| 2089|Caenorhabditis elegans Hypothetical pr... 28 8.8
>U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical
protein R05G6.7 protein.
Length = 283
Score = 68.5 bits (160), Expect = 5e-12
Identities = 28/68 (41%), Positives = 42/68 (61%)
Frame = +1
Query: 262 KFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTN 441
K+ + YG+T TEKWNT+N L T I + ++ GLKVTL+ +AP G ++GK+K +
Sbjct: 62 KYKIPQYGITLTEKWNTENQLGTVIEVNEQFGRGLKVTLDSLYAPHAGKRSGKVKLDWAL 121
Query: 442 DTVAVNTN 465
T V +
Sbjct: 122 PTARVTAD 129
Score = 61.3 bits (142), Expect = 8e-10
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Frame = +2
Query: 86 MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKS--ESGVEFTSGITSNQESGKVFGSL 256
MAPP +ADLGK A D+F+KGY+FG K+D T++ VEF S + N SGK+ G+L
Sbjct: 1 MAPPTFADLGKSAKDLFNKGYNFGFLKIDSTTRAGDNKEVEFKSAASHNIGSGKLGGNL 59
Score = 52.0 bits (119), Expect = 5e-07
Identities = 21/58 (36%), Positives = 32/58 (55%)
Frame = +3
Query: 522 GWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSDKLDCG 695
GWL G FD+ K + + A G+ + + LH+ V N DFG S+Y KV+ ++ G
Sbjct: 148 GWLIGAAATFDSSSNKLAATSLAFGHSTPQYTLHSFVINSTDFGASLYHKVASNVEVG 205
>AL022270-2|CAB63433.2| 952|Caenorhabditis elegans Hypothetical
protein C26G2.2 protein.
Length = 952
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 280 YGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTND 444
Y TFT W+T++T+ T QD + + T E T A + + T T +
Sbjct: 460 YPSTFTSSWSTESTVLT-TQQQDTTTSVILETTEATDAASSSLSPDDVSTQLTTE 513
>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical protein
T08A11.1 protein.
Length = 1872
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 256 SSKFAVKDYGLTFTEKWNTDNTLATD 333
S K+ V +G T EKWN D + TD
Sbjct: 1069 SKKYKVWAWGSTGEEKWNVDMEIGTD 1094
>U23139-10|AAN65328.1| 558|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform c protein.
Length = 558
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 618 EQSHQIGNLEQSCSWRTLLFVYQTGCVHQPANPGSLVCCN 499
E+SH++G + CS R F GC +N +C N
Sbjct: 413 ERSHKVGGMLLQCSTRDDSFRVSIGCGMNVSNDKPTMCLN 452
>U23139-9|AAN65327.1| 632|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform b protein.
Length = 632
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 618 EQSHQIGNLEQSCSWRTLLFVYQTGCVHQPANPGSLVCCN 499
E+SH++G + CS R F GC +N +C N
Sbjct: 487 ERSHKVGGMLLQCSTRDDSFRVSIGCGMNVSNDKPTMCLN 526
>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform a protein.
Length = 1051
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 618 EQSHQIGNLEQSCSWRTLLFVYQTGCVHQPANPGSLVCCN 499
E+SH++G + CS R F GC +N +C N
Sbjct: 906 ERSHKVGGMLLQCSTRDDSFRVSIGCGMNVSNDKPTMCLN 945
>AY601658-1|AAS98223.1| 558|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (62.5 kD) alternative
variant d protein.
Length = 558
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 618 EQSHQIGNLEQSCSWRTLLFVYQTGCVHQPANPGSLVCCN 499
E+SH++G + CS R F GC +N +C N
Sbjct: 413 ERSHKVGGMLLQCSTRDDSFRVSIGCGMNVSNDKPTMCLN 452
>AY601657-1|AAS98222.1| 558|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (62.5 kD) alternative
variant c protein.
Length = 558
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 618 EQSHQIGNLEQSCSWRTLLFVYQTGCVHQPANPGSLVCCN 499
E+SH++G + CS R F GC +N +C N
Sbjct: 413 ERSHKVGGMLLQCSTRDDSFRVSIGCGMNVSNDKPTMCLN 452
>AY601656-1|AAS98221.1| 632|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (70.9 kD) alternative
variant b protein.
Length = 632
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 618 EQSHQIGNLEQSCSWRTLLFVYQTGCVHQPANPGSLVCCN 499
E+SH++G + CS R F GC +N +C N
Sbjct: 487 ERSHKVGGMLLQCSTRDDSFRVSIGCGMNVSNDKPTMCLN 526
>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 256 SSKFAVKDYGLTFTEKWNTDNTLATD 333
S K+ V +G T EKWN D + TD
Sbjct: 1069 SKKYKVWAWGSTGEEKWNVDMEIGTD 1094
>Z38112-7|CAA86231.3| 2089|Caenorhabditis elegans Hypothetical
protein E03A3.6 protein.
Length = 2089
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 315 VCVPLLCESQAIVFHCKFGGRLPKTFPLSWLEVIPLVNST 196
+CV CE++ V C+F G LP + LE +V ST
Sbjct: 808 MCVAQACEAEEEVEECEFVGILPSVTHDNVLETGQVVTST 847
>Z35637-8|CAO82018.1| 2089|Caenorhabditis elegans Hypothetical
protein E03A3.6 protein.
Length = 2089
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 315 VCVPLLCESQAIVFHCKFGGRLPKTFPLSWLEVIPLVNST 196
+CV CE++ V C+F G LP + LE +V ST
Sbjct: 808 MCVAQACEAEEEVEECEFVGILPSVTHDNVLETGQVVTST 847
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,202,080
Number of Sequences: 27780
Number of extensions: 381021
Number of successful extensions: 938
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -