Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0738
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    26   2.5  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   2.5  
SPAC9.02c |||N-acetyltransferase|Schizosaccharomyces pombe|chr 1...    25   3.3  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   5.8  

>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 134 TGLGTQAVHHLSTRTPWPGE*LVKSKYP 217
           TG+ T+    L T+T W  + L+ +KYP
Sbjct: 630 TGVYTETESSLVTQTGWALDALINAKYP 657


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 298 QTMFWFIYFTCSY*MILLYSF 360
           +++F+ ++F CS+   LLYSF
Sbjct: 15  ESLFFRLFFVCSFFFPLLYSF 35


>SPAC9.02c |||N-acetyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 165

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 172 KNAVARRMISEVEVSVNL*TKNAPARRHLDIRRTLIPFY 288
           KN  A+++I E++          P+R  L   + L+PFY
Sbjct: 100 KNGYAKKLIEELQFRCQHTITPKPSRMILISHKPLVPFY 138


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 22   LLPHEGNCNLFYYCVWGRKVLRHCPSTLHFNKVIQVC 132
            ++PH+G  + FY     +  ++H  S   F+ V   C
Sbjct: 1186 MIPHDGRISAFYIASLQKYFVKHGLSPYAFSTVYSNC 1222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,691,191
Number of Sequences: 5004
Number of extensions: 33304
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)