Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0738
         (401 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr...    58   2e-09
U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical pr...    39   0.002
U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical pr...    38   0.003
DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin p...    38   0.003
U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    36   0.014
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    32   0.18 
Z70311-3|CAA94372.1|  546|Caenorhabditis elegans Hypothetical pr...    29   0.94 
AF101310-4|AAC69214.2|  662|Caenorhabditis elegans Hypothetical ...    29   1.2  
Z81585-1|CAB04681.2|  343|Caenorhabditis elegans Hypothetical pr...    27   3.8  

>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
            H02I12.1 protein.
          Length = 1319

 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 21/34 (61%), Positives = 25/34 (73%)
 Frame = +1

Query: 40   NCNLFYYCVWGRKVLRHCPSTLHFNKVIQVCDWP 141
            NC +FY CVWGRKV+  CPS   FN ++ VCDWP
Sbjct: 1257 NCEVFYRCVWGRKVVMTCPSGTVFNPLLSVCDWP 1290



 Score = 29.9 bits (64), Expect = 0.71
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +1

Query: 22   LLPHEGNCNLFYYCVWGRKVLRH--CPSTLHFNKVIQVCDWPWD-AGCASSFDKN 177
            L  +E +C+    C +G ++  H  C S+L FN++   CD+P   +GC +    N
Sbjct: 1189 LYRNERDCSAILQC-FGGELFEHPSCQSSLAFNQLTGKCDYPQKVSGCENHGQTN 1242



 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 37  GNCNLFYYCVWGRKVLRHCPSTLHFNKVIQVC 132
           G  N F  CV G   +  CP +L FN+  Q C
Sbjct: 110 GCSNQFISCVAGGAYMAKCPDSLVFNERTQDC 141



 Score = 26.6 bits (56), Expect = 6.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 52  FYYCVWGRKVLRHCPSTLHFNKVIQVCDW 138
           +  C  G  ++R C  +L+FN+  Q C +
Sbjct: 708 YIQCSNGAAIVRRCGESLYFNEATQECTY 736


>U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical
           protein R02F2.4 protein.
          Length = 431

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 46  NLFYYCVWGRKVLRHCPSTLHFNKVIQVCDWPWDA-GCASSFDK 174
           N+F+ C  G    R+CP+ L FN  I  CDWP +   C+   +K
Sbjct: 192 NVFFSCSEGIAHRRNCPANLVFNPAISSCDWPKNVMDCSEKSEK 235



 Score = 31.1 bits (67), Expect = 0.31
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 37  GNCNL-FYYCVWGRKVLRHCPSTLHFNKVIQVCDWPWD 147
           G C+  F  C  G  ++  CP  L F++  Q+CD+ W+
Sbjct: 249 GRCSSSFSACTNGIPIVMFCPDGLMFSEKNQMCDYEWN 286



 Score = 29.5 bits (63), Expect = 0.94
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 52  FYYCVWGRKVLRHCPSTLHFNKVIQVCDW 138
           F  CV G      CP  L ++K ++ CDW
Sbjct: 42  FLACVSGEARYMDCPEDLVYHKNLEFCDW 70



 Score = 28.7 bits (61), Expect = 1.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 61  CVWGRKVLRHCPSTLHFNKVIQVCDWP 141
           C  GR+ +  CP +L FN+   +CD+P
Sbjct: 329 CQNGRENIFECPPSLVFNENSLICDYP 355


>U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical
           protein B0280.5 protein.
          Length = 524

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 37  GNCNL-FYYCVWGRKVLRHCPSTLHFNKVIQVCDWPWD-AGCA 159
           G C+  F  C  G   +  CP++L FN  I VCDWP D A CA
Sbjct: 258 GVCSTNFLTCSGGIARIMDCPASLVFNPTILVCDWPRDVAECA 300



 Score = 31.1 bits (67), Expect = 0.31
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 37  GNCN-LFYYCVWGRKVLRHCPSTLHFNKVIQVCDWPWDA-GCASS 165
           G C   F  C  G   +  CP+ L +N+ + +CDW  +  GC  S
Sbjct: 35  GECEPQFLTCSGGIARIMDCPADLIYNEPLLICDWRHNVIGCEGS 79



 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 37  GNCNL-FYYCVWGRKVLRHCPSTLHFNKVIQVCDW 138
           G C+  F  C  GR ++  CP+ L F++    CD+
Sbjct: 318 GQCSSSFTACTNGRAIVMFCPAGLKFSESTVRCDY 352



 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 61  CVWGRKVLRHCPSTLHFNKVIQVCDWP 141
           C  G   +  CPS+L FN    +CD+P
Sbjct: 422 CQNGHVDIFECPSSLVFNDQSLICDYP 448


>DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin
           proteoglycan-2 protein.
          Length = 524

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 37  GNCNL-FYYCVWGRKVLRHCPSTLHFNKVIQVCDWPWD-AGCA 159
           G C+  F  C  G   +  CP++L FN  I VCDWP D A CA
Sbjct: 258 GVCSTNFLTCSGGIARIMDCPASLVFNPTILVCDWPRDVAECA 300



 Score = 31.1 bits (67), Expect = 0.31
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 37  GNCN-LFYYCVWGRKVLRHCPSTLHFNKVIQVCDWPWDA-GCASS 165
           G C   F  C  G   +  CP+ L +N+ + +CDW  +  GC  S
Sbjct: 35  GECEPQFLTCSGGIARIMDCPADLIYNEPLLICDWRHNVIGCEGS 79



 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 37  GNCNL-FYYCVWGRKVLRHCPSTLHFNKVIQVCDW 138
           G C+  F  C  GR ++  CP+ L F++    CD+
Sbjct: 318 GQCSSSFTACTNGRAIVMFCPAGLKFSESTVRCDY 352



 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 61  CVWGRKVLRHCPSTLHFNKVIQVCDWP 141
           C  G   +  CPS+L FN    +CD+P
Sbjct: 422 CQNGHVDIFECPSSLVFNDQSLICDYP 448


>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 35.5 bits (78), Expect = 0.014
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 28  PHEGNCNLFYYCVWGRKVLRHCPSTLHFNKVIQVCDWPWDAGCA 159
           P+  NC LF  C+  +     CPS L ++  ++ C     +GC+
Sbjct: 490 PNSNNCGLFVLCLSSKSYSMSCPSGLQYSASLKYCTTSTASGCS 533



 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 40  NCNLFYYCVWGRKVLRHCPSTLHFNKVIQVCDWPWDAGCA 159
           +C  F  CV G      CP+ L F+    +CD P  + CA
Sbjct: 577 DCLKFIRCVNGISYNFECPNGLSFHADTMMCDRPDPSKCA 616


>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
           protein C39D10.7 protein.
          Length = 1185

 Score = 31.9 bits (69), Expect = 0.18
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 37  GNC-NLFYYCVWGRKVLRHCPSTLHFNKVIQVCDW 138
           G C ++FY C  G+ V   CP+ L FN  +  CD+
Sbjct: 585 GLCKSVFYICANGQVVATTCPANLIFNPYVGECDY 619



 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 52  FYYCVWGRKVLRHCPSTLHFNKVIQVCDW 138
           F+ C  GR     CP  L FNK    CD+
Sbjct: 450 FFTCHDGRAFANDCPGDLVFNKATGTCDF 478



 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 31   HEGNCNLFYYCVWGRKVLR-HCPSTLHFNKVIQVCDWPWDA 150
            +   C+ +Y+     ++ +  CP++L F+K  + C +P DA
Sbjct: 963  YSAGCSSYYFSCIDEQIRKMSCPNSLKFSKESEKCVFPIDA 1003



 Score = 26.2 bits (55), Expect = 8.8
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +1

Query: 43  CNLFYY-CVWGRKVLRHCPSTLHFNKVIQVCDWPWDAGCASSFDKNAVA 186
           CN  YY C  G   +R CP    +  +++ CD+  +   +      A A
Sbjct: 127 CNENYYQCANGISYMRKCPYQQVYVPILKRCDYHTNCNASGGVKDQAAA 175


>Z70311-3|CAA94372.1|  546|Caenorhabditis elegans Hypothetical
           protein T25B9.4 protein.
          Length = 546

 Score = 29.5 bits (63), Expect = 0.94
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 120 HPGLRLALGRRLCIIFRQERRGQEN 194
           HP LR+ LGR +C+ F + +  Q N
Sbjct: 109 HPNLRIKLGRPICLFFWEFKHSQIN 133


>AF101310-4|AAC69214.2|  662|Caenorhabditis elegans Hypothetical
           protein C39F7.5 protein.
          Length = 662

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 1   VNPHIHWLLPHEGNCNLFYYCVWGRKVLRH 90
           +NP +HWL P + +    YY  +   +L+H
Sbjct: 520 INPDVHWLKPEDESTGPRYYRPYHTALLKH 549


>Z81585-1|CAB04681.2|  343|Caenorhabditis elegans Hypothetical
           protein T05E12.1 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 278 FPFIKCTKQCFGLFISHVPIR*FY-YIVL 361
           FP I  T  CFGL +S + ++ FY YI +
Sbjct: 86  FPLIATTSGCFGLCLSVLALQFFYRYIAI 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,379,991
Number of Sequences: 27780
Number of extensions: 188871
Number of successful extensions: 377
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)