Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0738
         (401 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21175.2 68416.m02676 zinc finger (GATA type) family protein ...    31   0.29 
At3g21175.1 68416.m02675 zinc finger (GATA type) family protein ...    28   2.7  
At5g15900.1 68418.m01860 expressed protein several hypothetical ...    27   3.5  
At2g40960.1 68415.m05058 expressed protein                             27   4.7  
At1g48560.1 68414.m05430 expressed protein                             27   4.7  
At5g61190.1 68418.m07676 zinc finger protein-related contains Pf...    27   6.2  
At2g17150.1 68415.m01980 RWP-RK domain-containing protein simila...    27   6.2  
At5g37450.1 68418.m04507 leucine-rich repeat transmembrane prote...    26   8.2  

>At3g21175.2 68416.m02676 zinc finger (GATA type) family protein
           similar to zinc finger protein ZIM gi:8918533 from
           [Arabidopsis thaliana]; contains Pfam PF00320: GATA zinc
           finger
          Length = 295

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 12/93 (12%)
 Frame = +3

Query: 39  KLQSILLLCLGKKSLETLP*HI-TLQQSHPGL-----RLALGRRLCII--FRQERRGQEN 194
           K+Q++LLL  G++   TLP  + +  Q++ GL     RL++ +RL  +  FR++R+G+  
Sbjct: 98  KVQAVLLLLGGREVPHTLPTTLGSPHQNNRGLSGTPQRLSVPQRLASLLRFREKRKGRNF 157

Query: 195 D**SR-SIRQSVNEKCSRKT---TS*YSTNVDS 281
           D   R ++R+ V  +  RK    TS  S+N DS
Sbjct: 158 DKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDS 190


>At3g21175.1 68416.m02675 zinc finger (GATA type) family protein
           similar to zinc finger protein ZIM gi:8918533 from
           [Arabidopsis thaliana]; contains Pfam PF00320: GATA zinc
           finger
          Length = 297

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 16/97 (16%)
 Frame = +3

Query: 39  KLQSILLLCLGKKSLETLP*HITLQQSHP-----GL-----RLALGRRLCII--FRQERR 182
           K+Q++LLL  G++   TLP   TL   H      GL     RL++ +RL  +  FR++R+
Sbjct: 98  KVQAVLLLLGGREVPHTLP--TTLGSPHQNNRVLGLSGTPQRLSVPQRLASLLRFREKRK 155

Query: 183 GQEND**SR-SIRQSVNEKCSRKT---TS*YSTNVDS 281
           G+  D   R ++R+ V  +  RK    TS  S+N DS
Sbjct: 156 GRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDS 192


>At5g15900.1 68418.m01860 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 426

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -3

Query: 285 KGNQRSSNIKMSSCGSIFRLQIDGYFDFTNHSPGHGVLVER*CTA-CVPRPVANLDDFV 112
           +  ++   +++        L+ DG+     H P   V +   C   C+P P+ NL+DF+
Sbjct: 347 EAKKKGKRLRLLDTTQAMWLRPDGHPSRYGHIPEANVTLYNDCVHWCLPGPIDNLNDFL 405


>At2g40960.1 68415.m05058 expressed protein
          Length = 351

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 139 PWDAGCASSFDKNAVARRMISEVEVSVNL*TKNAPARR 252
           PW   C+SS D+N V +    E + + N+  K+ PA R
Sbjct: 186 PWRVNCSSSRDENQVLKNGNIEADKN-NISRKSNPASR 222


>At1g48560.1 68414.m05430 expressed protein
          Length = 643

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 76  KVLRHCPSTLHFNKVIQVCDW 138
           K L  C S  H +KV+Q+C W
Sbjct: 214 KDLPCCSSEQHVDKVVQICTW 234


>At5g61190.1 68418.m07676 zinc finger protein-related contains Pfam
           profile PF04396: Protein of unknown function DUF537,
           weak hit to PF00096: Zinc finger C2H2 type
          Length = 977

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = -3

Query: 336 IGTCEINKPKHCLVHLIKGNQRSSNIKMSSCGSIFRLQIDGYFDFTNHSPGH 181
           I  CE+  P+    H+I  N  SS +KM+ CG +    I  Y D TN  P H
Sbjct: 19  IENCEV--PRGWDAHVIALNVSSSLLKMNYCGPV---SISAYGD-TNLIPLH 64


>At2g17150.1 68415.m01980 RWP-RK domain-containing protein similar
           to nodule inception protein [Lotus japonicus]
           GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
          Length = 909

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 217 RILRLH*SFSWPRRSCRKMMHSLR 146
           RI R H    WP R  +K+ HSL+
Sbjct: 638 RICRQHGIMRWPSRKIKKVGHSLK 661


>At5g37450.1 68418.m04507 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 935

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 267 TNVDSLLLNAPNNVLVYLF 323
           +NV S+LLN P+NV V L+
Sbjct: 309 SNVSSVLLNPPSNVTVKLY 327


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,651,871
Number of Sequences: 28952
Number of extensions: 169459
Number of successful extensions: 396
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)