Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0737
(556 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 98 9e-22
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 36 0.004
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 4.3
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 25 7.5
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 7.5
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 7.5
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 25 9.9
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 9.9
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom... 25 9.9
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 97.9 bits (233), Expect = 9e-22
Identities = 41/84 (48%), Positives = 60/84 (71%)
Frame = +3
Query: 240 LPASVCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNE 419
LPA +C+KMGVPY IVK K+RLG ++H+KT LA+T V D+ + +V A+ NF+
Sbjct: 166 LPA-LCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAVDANFSA 224
Query: 420 RYEELRKHWGGGVLGNKSNARIAK 491
+Y+E R+ WGGG++G K+ A +AK
Sbjct: 225 KYDESRRKWGGGIMGGKTQALLAK 248
Score = 66.9 bits (156), Expect = 2e-12
Identities = 38/89 (42%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = +1
Query: 1 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXR-PNTIRSGTNTVTKLV 177
K TA +FK+L KYRPET + P ++ G N V L+
Sbjct: 84 KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALI 143
Query: 178 EKKKAQLVVIAHDVDPIELVLFLPAFAVK 264
E KKA+LV+IA DVDPIELV+FLPA K
Sbjct: 144 EAKKAKLVLIASDVDPIELVVFLPALCKK 172
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 35.9 bits (79), Expect = 0.004
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +1
Query: 142 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLP 249
+R G N TK + + ++ +V+A D +PIE++L LP
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLP 67
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 4.3
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -1
Query: 163 LCLCRIGWC 137
LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334
>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 372
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 275 ILHCQGQVPPRCTCTPQDMHMLSSNKC 355
+LHC + RC C P+++ + S++ C
Sbjct: 333 LLHCPRK--GRCFCKPEEIDLSSNSSC 357
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +1
Query: 7 TAKGLFKILEKYR 45
TA+GL+K+LEKY+
Sbjct: 94 TAQGLYKMLEKYK 106
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = -2
Query: 366 HQTPHLLELSMCMSCGVQVHRGGTCP*QCSMV-HPFYG 256
H HL +S C+ ++H G P + HP YG
Sbjct: 803 HMPVHLGSMSTCVRTQAKIHEGKLKPGDVLVTNHPSYG 840
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 24.6 bits (51), Expect = 9.9
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 381 SKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLE 497
+K+ EA K FNE E+L GGG L K+ A+L+
Sbjct: 23 AKINEA-KKRFNEHKEKLGAIRGGGSLQEKNAELRAELD 60
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 24.6 bits (51), Expect = 9.9
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = -1
Query: 451 PPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLT 284
P Q + SSS S V + S++ S DST + + + T P P+T
Sbjct: 264 PTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPIT 319
>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 188
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 144 PIRHKHSHQAGREEEGAACGHR 209
P HKH++ +EE +C HR
Sbjct: 151 PNGHKHTYAEMTDEERNSCSHR 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,686,757
Number of Sequences: 5004
Number of extensions: 27219
Number of successful extensions: 89
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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