Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0737
(556 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 117 7e-27
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 116 1e-26
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 79 2e-15
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 37 0.012
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 36 0.029
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 31 0.82
01_05_0608 - 23628100-23631486 28 5.8
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 27 7.6
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 27 7.6
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 27 7.6
05_03_0629 + 16376575-16376689,16376792-16376839,16376927-163770... 27 7.6
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 117 bits (281), Expect = 7e-27
Identities = 50/81 (61%), Positives = 69/81 (85%)
Frame = +3
Query: 240 LPASVCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNE 419
LPA +CRKM VPYCIVKGK+RLG++VH+KT + L LT V++ D+ FSK++EAIK NFN+
Sbjct: 162 LPA-LCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFND 220
Query: 420 RYEELRKHWGGGVLGNKSNAR 482
+++E+RK WGGGV+G+KS A+
Sbjct: 221 KFDEVRKKWGGGVMGSKSQAK 241
Score = 66.9 bits (156), Expect = 1e-11
Identities = 39/88 (44%), Positives = 47/88 (53%)
Frame = +1
Query: 1 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 180
K A LFK+L KYRPE +P ++ G N VT L+E
Sbjct: 82 KNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEAK-KPIVVKYGLNHVTYLIE 140
Query: 181 KKKAQLVVIAHDVDPIELVLFLPAFAVK 264
+ KAQLVVIAHDVDPIELV++LPA K
Sbjct: 141 QSKAQLVVIAHDVDPIELVVWLPALCRK 168
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 116 bits (280), Expect = 1e-26
Identities = 48/81 (59%), Positives = 70/81 (86%)
Frame = +3
Query: 240 LPASVCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNE 419
LPA +CRKM +PYCIVKGK+RLG++VH+KT + L LT V++ D+ FSK++EAIK+NFN+
Sbjct: 147 LPA-LCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKSNFND 205
Query: 420 RYEELRKHWGGGVLGNKSNAR 482
+++E+RK WGGG++G+KS A+
Sbjct: 206 KFDEVRKKWGGGIMGSKSQAK 226
Score = 58.0 bits (134), Expect = 5e-09
Identities = 27/45 (60%), Positives = 35/45 (77%)
Frame = +1
Query: 130 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPAFAVK 264
+P ++ G + VT L+E+ KAQLVVIAHDVDPIELV++LPA K
Sbjct: 109 KPIVVKYGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRK 153
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 79.0 bits (186), Expect = 2e-15
Identities = 31/57 (54%), Positives = 47/57 (82%)
Frame = +3
Query: 312 LVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNAR 482
+VH+KT + L LT V++ D+ FSK++EAIK NFN++++E+RK WGGGV+G+KS A+
Sbjct: 155 IVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAK 211
Score = 66.9 bits (156), Expect = 1e-11
Identities = 39/88 (44%), Positives = 47/88 (53%)
Frame = +1
Query: 1 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 180
K A LFK+L KYRPE +P ++ G N VT L+E
Sbjct: 66 KNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEAK-KPIVVKYGLNHVTYLIE 124
Query: 181 KKKAQLVVIAHDVDPIELVLFLPAFAVK 264
+ KAQLVVIAHDVDPIELV++LPA K
Sbjct: 125 QSKAQLVVIAHDVDPIELVVWLPALCRK 152
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 36.7 bits (81), Expect = 0.012
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +1
Query: 142 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPAFA 258
++ G N TK + + A+ VV+A D +P+E++L LP A
Sbjct: 33 LKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLA 71
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 35.5 bits (78), Expect = 0.029
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +1
Query: 142 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPAFA 258
++ G N TK + + ++ VV+A D +P+E++L LP A
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLA 73
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 30.7 bits (66), Expect = 0.82
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +3
Query: 252 VCRKMGVPYCIVKGKSRL--GALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERY 425
+C + +PY V K L R TC L LT G+ V E +KT++++
Sbjct: 82 LCEEANIPYVYVPSKEDLATAGTTKRPTCCVLVLTKPAKGELE--EDVKEKLKTDYDQVM 139
Query: 426 EELRKHWGG 452
E+ + G
Sbjct: 140 SEVAEAGNG 148
>01_05_0608 - 23628100-23631486
Length = 1128
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +3
Query: 234 GSLPASVCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNF 413
GS+P S+C+ G+ + G G L + +TN S D+ F + ++ N
Sbjct: 751 GSIPPSMCQLTGLKRLDLSGNKITGDLEQMQCWKQSDMTNTNSADK--FGSSMLSLALNH 808
Query: 414 NE 419
NE
Sbjct: 809 NE 810
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 105 QER*ASTKEAQHHPIRHKHSHQAGREEEGAACGHR 209
QER A + + H RH H H A + + GHR
Sbjct: 685 QER-ARRRHKRAHSHRHSHHHDAHKRHKTELAGHR 718
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 151 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPAFAVKWVYH 276
G K +EK AQL V+A D D + V + A + H
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVH 82
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 151 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPAFAVKWVYH 276
G K +EK AQL V+A D D + V + A + H
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVH 82
>05_03_0629 +
16376575-16376689,16376792-16376839,16376927-16377012,
16377791-16377878,16378387-16378472,16378604-16378690,
16379111-16379293,16379387-16379470,16379590-16379651,
16379752-16379827,16379906-16379968,16380060-16380141,
16380840-16380916,16381502-16381549,16381681-16381743
Length = 415
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 460 RTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPD 359
R+PPP LR + R + V A T E +A +P+
Sbjct: 28 RSPPPSSLRLNRRRHFQVVRAAETDKETKANAPE 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,151,620
Number of Sequences: 37544
Number of extensions: 219230
Number of successful extensions: 767
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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