Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0737
(556 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 117 7e-27
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 117 7e-27
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27) 36 0.017
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15) 33 0.21
SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35) 31 0.84
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7) 28 4.5
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74) 28 4.5
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05) 28 4.5
SB_33912| Best HMM Match : Transposase_27 (HMM E-Value=3.6) 28 4.5
SB_38146| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35) 27 7.8
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 117 bits (281), Expect = 7e-27
Identities = 50/86 (58%), Positives = 68/86 (79%)
Frame = +3
Query: 240 LPASVCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNE 419
LPA +CRKM VPYCIVKGK+RLG +VH+K T L +T V D+ S + ++E++KTN+NE
Sbjct: 79 LPA-LCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNSLNNLIESVKTNYNE 137
Query: 420 RYEELRKHWGGGVLGNKSNARIAKLE 497
R++E+RKHWGGG++G KS A AK+E
Sbjct: 138 RFDEIRKHWGGGIMGPKSLAATAKVE 163
Score = 73.7 bits (173), Expect = 9e-14
Identities = 38/82 (46%), Positives = 46/82 (56%)
Frame = +1
Query: 19 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAQL 198
LFK+L KYRPET +P ++ G N +T LVE KKAQL
Sbjct: 4 LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63
Query: 199 VVIAHDVDPIELVLFLPAFAVK 264
VVIAHDVDPIE+V++LPA K
Sbjct: 64 VVIAHDVDPIEIVVWLPALCRK 85
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 117 bits (281), Expect = 7e-27
Identities = 50/86 (58%), Positives = 68/86 (79%)
Frame = +3
Query: 240 LPASVCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNE 419
LPA +CRKM VPYCIVKGK+RLG +VH+K T L +T V D+ S + ++E++KTN+NE
Sbjct: 170 LPA-LCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNSLNNLIESVKTNYNE 228
Query: 420 RYEELRKHWGGGVLGNKSNARIAKLE 497
R++E+RKHWGGG++G KS A AK+E
Sbjct: 229 RFDEIRKHWGGGIMGPKSLAATAKVE 254
Score = 73.7 bits (173), Expect = 9e-14
Identities = 38/82 (46%), Positives = 46/82 (56%)
Frame = +1
Query: 19 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAQL 198
LFK+L KYRPET +P ++ G N +T LVE KKAQL
Sbjct: 95 LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 154
Query: 199 VVIAHDVDPIELVLFLPAFAVK 264
VVIAHDVDPIE+V++LPA K
Sbjct: 155 VVIAHDVDPIEIVVWLPALCRK 176
>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
Length = 187
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +1
Query: 142 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLP 249
+R G N TK + + A+ +V+A D +P+E++L LP
Sbjct: 94 LRKGANEATKCLNRGIAEFIVMAADTEPLEILLHLP 129
>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
Length = 544
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 130 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLP 249
+ T+R G V K + K + V++A DV PI+++ +P
Sbjct: 95 KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIP 134
>SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)
Length = 1898
Score = 30.7 bits (66), Expect = 0.84
Identities = 16/67 (23%), Positives = 36/67 (53%)
Frame = +3
Query: 234 GSLPASVCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNF 413
G + + C++ + +++GK + AL+ +KT L + V R S + VV+ ++
Sbjct: 1201 GIICEASCKRCRDEFTVIRGKEK--ALLGKKTAEQLKVLGVGPETRESVNAVVKGSDSDI 1258
Query: 414 NERYEEL 434
+E+Y ++
Sbjct: 1259 HEQYSDI 1265
>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1957
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 285 VKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 434
VKGK+ LG +KT L + V R S S VVEA ++ E+Y ++
Sbjct: 1092 VKGKALLG----KKTAEQLKVLRVGPETRESVSAVVEASDSDIREQYSDI 1137
>SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +3
Query: 276 YCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 434
+ +++GK + AL+ +KT L + V S S VVEA ++ E+Y ++
Sbjct: 338 FTVIRGKGK--ALLGKKTAEQLKVLRVGPETGESVSAVVEASDSDIREQYSDI 388
>SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)
Length = 189
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -1
Query: 460 RTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDST 353
R + +RS S RSL L ST+ EKEA+ D+T
Sbjct: 113 RVRKKEIIRSGSSRSLPECLRISTSKEKEAKDIDNT 148
>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
Length = 437
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 385 FEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLT 284
F + +S R +H H+ RCTSAP P T
Sbjct: 61 FNNFTNTTESWPQRKRHFHLRRCTSAPEPSSPNT 94
>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
Length = 212
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 132 PLWWRLIFLGNLSFSSFPQPLFPG 61
P WW ++F+G + FS L+PG
Sbjct: 56 PKWWFMLFIGTIVFSIGYLVLYPG 79
>SB_33912| Best HMM Match : Transposase_27 (HMM E-Value=3.6)
Length = 760
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 285 QCSMVHPFYGKRWQEENQLNR 223
Q S +PF GKRW+ + Q+ R
Sbjct: 25 QASCAYPFVGKRWEAKGQIVR 45
>SB_38146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 217 VDPIELVLFLPAFAVKWVYHTALSRASPASVHLYTARHAH 336
V I L+ + F W Y AL+ SPA+V++ ++ H
Sbjct: 68 VAKIALMFCILWFLATWSYQEALNDTSPAAVNILSSSSGH 107
>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
Length = 2748
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 366 DRASFSKVVEAIKTNFNERYEELRKHWGG 452
DRAS+ + EA + + ER EEL K W G
Sbjct: 635 DRASYYNMAEAAEVS--ERVEELVKQWRG 661
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,441,074
Number of Sequences: 59808
Number of extensions: 229675
Number of successful extensions: 789
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -