Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0737
         (556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   102   2e-22
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   102   2e-22
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    35   0.045
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    29   1.7  
AF016452-10|AAB66019.1|  620|Caenorhabditis elegans Gastrulation...    27   6.9  
AF016421-11|AAM45373.2|  417|Caenorhabditis elegans Hypothetical...    27   6.9  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  102 bits (245), Expect = 2e-22
 Identities = 45/86 (52%), Positives = 64/86 (74%)
 Frame = +3

Query: 240 LPASVCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNE 419
           LPA +CRK  VPY I+KGK+ LG +V RKT   +AL +V   D+++ +K+VE +  NF+E
Sbjct: 171 LPA-LCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSE 229

Query: 420 RYEELRKHWGGGVLGNKSNARIAKLE 497
           R+EE+RKHWGGGV+  KS+A+  K+E
Sbjct: 230 RHEEIRKHWGGGVMSAKSDAKKLKIE 255



 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 38/87 (43%), Positives = 53/87 (60%)
 Frame = +1

Query: 7   TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKK 186
           +A+  FK+L+KYRPE+                         RPNT+R G NT+T+LVE +
Sbjct: 92  SARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVETR 151

Query: 187 KAQLVVIAHDVDPIELVLFLPAFAVKW 267
           +AQLV+IAHDV+P+E+VL LPA   K+
Sbjct: 152 RAQLVLIAHDVNPLEIVLHLPALCRKY 178


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  102 bits (245), Expect = 2e-22
 Identities = 45/86 (52%), Positives = 64/86 (74%)
 Frame = +3

Query: 240 LPASVCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNE 419
           LPA +CRK  VPY I+KGK+ LG +V RKT   +AL +V   D+++ +K+VE +  NF+E
Sbjct: 151 LPA-LCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSE 209

Query: 420 RYEELRKHWGGGVLGNKSNARIAKLE 497
           R+EE+RKHWGGGV+  KS+A+  K+E
Sbjct: 210 RHEEIRKHWGGGVMSAKSDAKKLKIE 235



 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 29/46 (63%), Positives = 39/46 (84%)
 Frame = +1

Query: 130 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPAFAVKW 267
           RPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPA   K+
Sbjct: 113 RPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKY 158


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 34.7 bits (76), Expect = 0.045
 Identities = 12/36 (33%), Positives = 25/36 (69%)
 Frame = +1

Query: 142 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLP 249
           ++ G N  TK + +  ++++V+A D +P+E++L LP
Sbjct: 35  LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLP 70


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = -2

Query: 96  SFSSFP--QPLFPGCFSLRPVFLQNLEKA 16
           SF SFP  QP+   C +++P F+ N+EKA
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKA 191


>AF016452-10|AAB66019.1|  620|Caenorhabditis elegans Gastrulation
           defective protein 1 protein.
          Length = 620

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 403 LMASTTFEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLTMQYGTPI 263
           L+  T  E   +S D  F     V V   TS+P +D P T+Q+  P+
Sbjct: 361 LLVKTGLENAFKSTDCGFSPRAEV-VFTGTSSPNKDTPGTLQFFDPM 406


>AF016421-11|AAM45373.2|  417|Caenorhabditis elegans Hypothetical
           protein F44E7.8 protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -3

Query: 335 CACLAVYKCTEAGLALDNAVWYTHFTANAGRKRTS 231
           C      KC + G+  DN  W     ++  RKR S
Sbjct: 79  CRLCRYKKCLQLGMTADNVQWNRDMISSTDRKRQS 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,774,594
Number of Sequences: 27780
Number of extensions: 170450
Number of successful extensions: 537
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)