Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0736
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    29   0.68 
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   0.89 
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   1.6  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    27   1.6  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    27   2.7  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    26   4.8  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.3  
SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit L8|S...    25   6.3  

>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +2

Query: 23  NFDHDKHIFTGHGGKQRTKKEASEH--TNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 190
           N + D +    H  K    ++ S H   +HFDPS + +K+V+      + K +S  KH
Sbjct: 18  NEEDDDYYSNAHSEKS---EDHSNHIKVSHFDPSSYKQKLVSVRETQRNRKFSSLQKH 72


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +2

Query: 47  FTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHN 166
           ++GH         ++   NHF+ +GH    +T  +N+ +N
Sbjct: 242 YSGHNSPHTNYSASTPSFNHFNAAGHPTGNITPTLNSPNN 281


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 439 YVQNIPTYCLAHLWRCPVLNRSLCEWA 359
           Y+QNIP       +RC  ++ ++C+W+
Sbjct: 466 YLQNIPIQKKYESYRCLFISGTICQWS 492


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +2

Query: 8   EYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHS 127
           +YD++N DH  H    H     +  EA+         GHS
Sbjct: 21  DYDHHNHDHHGHDHHSHDSSSNSSSEAA-RLQFIQEHGHS 59


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -1

Query: 480 LTSPLFEIRHWNGVTSKIYRLTAWLICGVVP 388
           L  P F + HW     + Y    WL C  +P
Sbjct: 251 LEMPFFALSHWYAFRIEDYDTPTWLSCARLP 281


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -2

Query: 332 NA*DVPSISETSIHPNTPRVSAIASSFVWQLNSPSASHSCLLISN 198
           N    P+I + S+H N P  S    S    L   S S S   ISN
Sbjct: 140 NGSSYPNIRKNSVHVNAPMPSFPEGSTAVLLKHHSGSKSASAISN 184


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +1

Query: 370 RGCDLERDNATNEPSSKSVYFGRNTVPVSDLE*WAREPGTAV 495
           RG   E+DN     SS+S  +    V VS+L    R PG  V
Sbjct: 3   RGKCKEKDNGLKRISSESEVWNFLDVTVSELNKQKRSPGQTV 44


>SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 207

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 213 TTMASRRTIELPNEGGRYCGYPRSVRVDARLRD 311
           TT+     + +P   GR CGY R +++  R  D
Sbjct: 77  TTLKKVFDVLVPRYNGRRCGYTRLLKLPPRSTD 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,605
Number of Sequences: 5004
Number of extensions: 51722
Number of successful extensions: 276
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)