Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0736
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0172 + 11473892-11474896                                         29   3.7  
03_02_0271 + 7029410-7029949,7030054-7030566                           28   4.9  
09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,388...    28   6.5  
07_03_0740 - 21102015-21102287,21102402-21102555,21102647-211028...    28   6.5  
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191...    28   6.5  
01_03_0251 + 14247293-14249926                                         28   6.5  
12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110     27   8.5  
04_03_0401 - 15438674-15438772,15439084-15439348,15439822-154399...    27   8.5  

>10_06_0172 + 11473892-11474896
          Length = 334

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 258 GRYCGYPRSVRVDARLRDRWNILG 329
           G Y GYP +VRVDA     +N++G
Sbjct: 288 GAYPGYPGAVRVDAATGAGYNVVG 311


>03_02_0271 + 7029410-7029949,7030054-7030566
          Length = 350

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 112 SVRAFEKDRHETHERRAQQEDFKH-QTLDGLLINRQLWLAEGLLSCQT 252
           SV    K R E  E RA +E+           + R+LW   GLL+ QT
Sbjct: 201 SVVEVRKKREEEEELRAMEEEKAGIDAAAAAQVRRELWCGLGLLAAQT 248


>09_02_0071 -
           3877231-3877807,3880716-3880722,3880723-3881000,
           3881287-3883916
          Length = 1163

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 232 GLLSCQTKEDAIADTRGVFGWMLVSEIDGTS*AFFC 339
           GL+S   K D   D   VFG M+ S I  T   F C
Sbjct: 172 GLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSC 207


>07_03_0740 -
           21102015-21102287,21102402-21102555,21102647-21102884,
           21103008-21103218,21103303-21103442,21103537-21103665,
           21104120-21104960
          Length = 661

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 292 WMLVSEIDGTS*AFFCSHKISTSPTHRGCDLERDNATNEPS 414
           W    +I G + +  CS +I T P   G  + R  AT+ PS
Sbjct: 224 WSYKDDIGGRTLSVRCSFRIETKPFLNGTTMVRLPATSAPS 264


>05_07_0146 +
           28018236-28018580,28018670-28018777,28018984-28019148,
           28019269-28019736,28019823-28019936,28020038-28020715
          Length = 625

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 23  NFDHDKHIFTGHGGKQR--TKKEASEHTNH 106
           +FDH  H    HGG++R  +  EA  H +H
Sbjct: 275 HFDHHNHHHPIHGGRERGSSPAEADHHRHH 304


>01_03_0251 + 14247293-14249926
          Length = 877

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 232 GLLSCQTKEDAIADTRGVFGWMLVSEIDGTS*AFFC 339
           GL+S   K D   D   VFG M+ S I  T   F C
Sbjct: 172 GLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSC 207


>12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110
          Length = 530

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 101 WCVQTLLSWCAAYHRG 54
           W ++ L  WCAA HRG
Sbjct: 192 WSLEQLNRWCAALHRG 207


>04_03_0401 -
           15438674-15438772,15439084-15439348,15439822-15439915,
           15439997-15440099,15440342-15440384,15440420-15440484
          Length = 222

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 137 VTKLMNAEHNKKTSNTKH*MDC*SIDNYG*QKDY*VAKRRRTLLR 271
           +  + N++HNK+  +TKH     SI+ +G  K    +  RR +L+
Sbjct: 101 IESIYNSQHNKRRKSTKHATPWASIERHG--KGIKASAARRLILQ 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,919,982
Number of Sequences: 37544
Number of extensions: 328554
Number of successful extensions: 869
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)