Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0736
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR...    30   1.0  
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t...    29   1.8  
At3g23190.1 68416.m02924 lesion inducing protein-related similar...    29   3.1  
At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein...    28   5.4  
At4g12820.1 68417.m02010 F-box family protein similar to F-box p...    28   5.4  
At2g42670.1 68415.m05281 expressed protein                             28   5.4  
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family...    27   9.4  
At1g26560.1 68414.m03236 glycosyl hydrolase family 1 protein con...    27   9.4  

>At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1165

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +1

Query: 133 DRHETHERRAQQEDFKHQTLDGLLINRQLWLAEGLLSCQTKEDAIADTRGVF 288
           + H+   R +++ D K  T  G    R+LW+ + +++ Q K    A+ RG+F
Sbjct: 511 EMHDLLYRFSRELDLKASTQGGSK-QRRLWVRQDIINVQQKTMGAANVRGIF 561


>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
           terminal ear1 gb|AAC39463.1
          Length = 527

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 106 LRSVRAFEKDRHETHERRAQQEDFKHQTLDGLLINRQLW 222
           + S RAF + R+   +++ QQ+ F   T  GL+    LW
Sbjct: 127 INSQRAFNEIRYRHMQQQEQQQHFHFTTARGLVSGHSLW 165


>At3g23190.1 68416.m02924 lesion inducing protein-related similar to
           ORF, able to induce HR-like lesions [Nicotiana tabacum]
          Length = 216

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +2

Query: 11  YDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKK 172
           YD+YN D+D+  FT    K    KE  E T   D  G +  + T ++N E  +K
Sbjct: 103 YDFYNRDYDRDHFTVFYTK---FKEFVEETTSAD-GGVAMSLYTSVVNEESRQK 152


>At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 595

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/55 (29%), Positives = 21/55 (38%)
 Frame = +2

Query: 26  FDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 190
           +D D   F G  G    +     HT H DPS   +  V    N+   K   + KH
Sbjct: 367 YDSDSLSFEG-SGSDSYRLSRRRHTKHVDPSASLKSEVYHQGNSHREKHYYDEKH 420


>At4g12820.1 68417.m02010 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 442

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 230 SASHSCLLISNPSSVWCL 177
           SAS SCL + NP+S W +
Sbjct: 96  SASESCLAVKNPTSPWII 113


>At2g42670.1 68415.m05281 expressed protein
          Length = 241

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 127 EKDRHETHERRAQQEDFKHQ-TLDGLLINRQLWLAE 231
           E DRH T+ R++++ED   +  +DG ++    WL E
Sbjct: 185 EHDRHCTYFRKSRREDLPGELEVDGEVVTDVTWLEE 220


>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 589

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 29  DHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTK 145
           DH+K      G ++R K + S+H +H     HS+KI T+
Sbjct: 96  DHEKGASKQVGRRERAKPDPSKH-HHRSHLPHSKKIETE 133


>At1g26560.1 68414.m03236 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to amygdalin hydrolase isoform AH I precursor
           (GI:16757966)  [Prunus serotina]
          Length = 510

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 512 FSRNNNTAVPGSRAHYSRSDTGTVLRP 432
           ++RNN T + G+  H + SD+GTV  P
Sbjct: 345 YARNNATNLIGTLLHDAVSDSGTVTLP 371


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,849,909
Number of Sequences: 28952
Number of extensions: 268539
Number of successful extensions: 647
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)