Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0735
(494 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 36 0.004
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo... 33 0.018
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 29 0.38
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 27 1.6
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe... 27 2.1
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 26 2.7
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 25 4.7
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc... 25 6.3
SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine kinase|Schizosacc... 25 8.3
>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 467
Score = 35.5 bits (78), Expect = 0.004
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +1
Query: 7 HTPAGASIRQVAHYGQIIRFDAFRRYDHDPIRNLINYGQLQPPNYDLSKITVPAYLHYGL 186
H + S++ + H+ QI+R FR YD+D + + + + + I P YL +G
Sbjct: 328 HLYSYTSVKCLVHWFQIMRSAEFRMYDNDQLGHDYFLKYYKAAKFPTNNIRTPIYLIWGG 387
Query: 187 KDRQVD 204
D VD
Sbjct: 388 SDSLVD 393
Score = 27.9 bits (59), Expect = 0.89
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 270 DSFNHFDFLWASDVKEMFYDRLLEHLK 350
DS+ H D +WA VK+ +L L+
Sbjct: 411 DSYEHLDMIWADTVKDYVIPPVLRRLR 437
>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 443
Score = 33.5 bits (73), Expect = 0.018
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 7 HTPAGASIRQVAHYGQIIRFDAFRRYDHDPIRNLINYG--QLQPPNYDLSKITVPAYLHY 180
H + +S++ V H+ QII+ F+ YD D + L YG Q P + + I P + +
Sbjct: 316 HLYSFSSVKSVVHWLQIIKNCTFQLYD-DDMALLAGYGSRHYQVPLFPTNNIKCPMLILW 374
Query: 181 GLKDRQVD 204
G KD ++
Sbjct: 375 GGKDTLIN 382
Score = 31.1 bits (67), Expect = 0.095
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 243 HNRRYKVARDSFNHFDFLWASDVKEMFYDRLLEHLK 350
H + +A + H DFLW DVKE + +++ LK
Sbjct: 393 HAKEVSIAH--YEHLDFLWGQDVKEEVFPVVIDALK 426
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 29.1 bits (62), Expect = 0.38
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 463 MISKTSYSSIECLSNTYLFALMIQRTSFPNYKNCASAS 350
++ +T+YS CL +LF R F K+C S+S
Sbjct: 63 LVYRTTYSFGVCLMKRFLFNKFFNRHPFTRVKSCFSSS 100
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 1.6
Identities = 16/75 (21%), Positives = 34/75 (45%)
Frame = +1
Query: 184 LKDRQVDYRDLYLLARKLPNTIGVTKWRVIASITSIFFGPLMSKKCFMIDYWST*NLRKR 363
+K +++ R L ++ + NT+ + + S+T++ P + Y N+R
Sbjct: 365 IKKYKINLRSLIIIDEGVSNTVKDLAF-LPQSLTTLIVKPCNPASTILCPYLFPTNVRME 423
Query: 364 NFCNLETMFFVSLKQ 408
+ NLE ++ L Q
Sbjct: 424 SLINLELFLYLRLSQ 438
>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 70 AFRRYDHDPIRNLINYGQLQPPNYDLSKITVPAYLHYGLKDRQVDYRDLYL 222
A R HD I + QL+P Y++ + P + LK ++YRDL +
Sbjct: 2 ALRYVVHDEISG---FDQLKPEEYEVPQKLNPGEVLVKLKAASLNYRDLII 49
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 26.2 bits (55), Expect = 2.7
Identities = 20/64 (31%), Positives = 27/64 (42%)
Frame = +1
Query: 31 RQVAHYGQIIRFDAFRRYDHDPIRNLINYGQLQPPNYDLSKITVPAYLHYGLKDRQVDYR 210
+Q +H + F+AF YD + RN+ P NY SK T+ DR D
Sbjct: 101 KQKSH-SALTDFEAFDPYDANIQRNMYRMDASGPANYGESKPTLLYTNQRDHLDRLCDQV 159
Query: 211 DLYL 222
YL
Sbjct: 160 KFYL 163
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 4.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 175 HYGLKDRQVDYRDLYL 222
HYGLKD ++ +R YL
Sbjct: 221 HYGLKDLEIRHRQRYL 236
>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
reductase AKR3C2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 284
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 160 VPAYLHYGLKDRQVDYRDLYLLARKLP 240
+P L+ L+ DY DLYLL +P
Sbjct: 87 IPEALNESLRKLGTDYLDLYLLHSPIP 113
>SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine
kinase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 340
Score = 24.6 bits (51), Expect = 8.3
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 333 LLEHLKLAEAQFL*FGNDVLCIIKANKYVLDKHSILEYEVL 455
LLE K+A +FL L +I++ +L K SI E E L
Sbjct: 291 LLEDPKIASDEFLLSNARELRLIQSRTALLSKKSIYEAEFL 331
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,835
Number of Sequences: 5004
Number of extensions: 37704
Number of successful extensions: 99
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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