Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0735
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646...    50   1e-06
09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36...    49   2e-06
08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734...    40   0.001
06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725...    34   0.055
01_06_1338 + 36411536-36411646,36411738-36411791,36411898-364119...    29   1.6  
03_05_0215 - 22044146-22045549                                         29   2.7  
01_06_0692 + 31276342-31276479,31277161-31277408,31277541-312777...    27   8.3  

>04_03_0156 -
           11963580-11963914,11964422-11964517,11964618-11964697,
           11965250-11965290,11965402-11965548,11965922-11966035,
           11968842-11968961,11969491-11969631,11969892-11970014,
           11970357-11970566
          Length = 468

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
 Frame = +1

Query: 1   LGHTPAGASIRQVAHYGQIIRFDAFRRYDH-DPIRNLINYGQLQPPNYDLSKI--TVPAY 171
           L H P   + + + H  Q+IR     +YD+ +   N  +YGQ  PP YD++ I    P +
Sbjct: 340 LAHEPQATATKNMIHLAQMIRGGTIAKYDYGNAGDNREHYGQATPPAYDVTAIPGDFPLF 399

Query: 172 LHYGLKDRQVDYRDLYLLARKL 237
           L YG +D   D +D+  L R L
Sbjct: 400 LSYGGRDSLSDVQDVSRLLRAL 421


>09_01_0014 +
           357398-357583,360213-360323,360520-360676,361067-361233,
           362012-362122,362206-362349,362436-362476,364134-364174,
           364175-364261,365402-365724
          Length = 455

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
 Frame = +1

Query: 55  IIRFDAFRRYDHDPIRNLINYGQLQPPNYDLSKI--TVPAYLHYGLKDRQVDYRDLYLLA 228
           +IR   F +YD+  + NL  YG L+PP +DLS I  ++P ++ YG  D   D  D+    
Sbjct: 349 VIRKGTFAKYDYGLLGNLRRYGHLRPPAFDLSSIPESLPIWMGYGGLDALADVTDVQRTI 408

Query: 229 RKLPNT 246
           R+L +T
Sbjct: 409 RELGST 414


>08_02_1358 -
           26372559-26372887,26373183-26373262,26373287-26373420,
           26373546-26373689,26373809-26373919,26374165-26374305,
           26376839-26376964,26377072-26377263
          Length = 418

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +1

Query: 58  IRFDAFRRYDHD-PIRNLINYGQLQPPNYDLSKITV--PAYLHYGLKDRQVDYRDLYLL 225
           +R     +YD+  P  N+  YGQ  PP YD++ I    P +L YG +D   D  D+ LL
Sbjct: 311 VRDGVLTKYDYVMPDANVARYGQADPPAYDMAAIPAWFPIFLSYGGRDSLSDPADVALL 369


>06_03_0852 -
           25371461-25371783,25372080-25372159,25372472-25372554,
           25372597-25372740,25372836-25372946,25373238-25373354,
           25373436-25373562,25374160-25374296
          Length = 373

 Score = 34.3 bits (75), Expect = 0.055
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +1

Query: 55  IIRFDAFRRYDHDPIR-NLINYGQLQPPNYDLSKIT--VPAYLHYGLKDRQVDYRDLYLL 225
           ++R     R+D+   + N+ +Y Q +PP Y+LS I   VP +L +G +D   D  D   L
Sbjct: 267 VVRNGGVSRFDYGNAKDNMKHYNQPRPPPYNLSSIPNHVPIFLTHGGEDYLGDVPDTRHL 326

Query: 226 ARKL 237
            R L
Sbjct: 327 LRTL 330


>01_06_1338 +
           36411536-36411646,36411738-36411791,36411898-36411974,
           36412108-36412195,36412289-36412561,36412651-36412968
          Length = 306

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 142 DLSKITVPAYLHYGLKDRQVDYRDLYLL 225
           DL+   VP  +   LKD Q+DY DLYL+
Sbjct: 84  DLAPEDVPLAMDSTLKDLQLDYVDLYLI 111


>03_05_0215 - 22044146-22045549
          Length = 467

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 241 LAISWPKGKDPCSRLACPL 185
           L + WP+G DP   +ACPL
Sbjct: 64  LYVRWPQGPDPEEMVACPL 82


>01_06_0692 +
           31276342-31276479,31277161-31277408,31277541-31277722,
           31278007-31278143,31278381-31278546,31278615-31278731,
           31279038-31279198,31279431-31279634
          Length = 450

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +1

Query: 7   HTPAGASIRQVAHYGQIIRFDAFRRYDHDPIRNLINYGQLQPPNYDLSKITVPAYLHYGL 186
           H P G  +R   HYG ++   +FR  +  PI   +      PP  +L+ IT P   H  L
Sbjct: 61  HLP-GPFLRPSPHYGALVHLPSFR--NKTPISIAMAASPSPPPLQELT-ITRPDDWHLHL 116

Query: 187 KDRQV 201
           ++  V
Sbjct: 117 REGDV 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,425,439
Number of Sequences: 37544
Number of extensions: 230912
Number of successful extensions: 572
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)