Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0734
         (814 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874...    30   1.9  
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813...    30   2.5  
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543...    30   2.5  
11_04_0454 - 17895935-17896093,17896878-17896911,17897114-178972...    29   3.3  
08_01_0220 - 1751367-1752854                                           29   5.8  
01_06_0125 + 26711157-26713297,26715026-26715206                       28   7.7  

>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
            26887942-26888055,26888132-26888228,26889115-26889235,
            26889306-26889390,26889494-26889643,26889871-26889987,
            26890123-26890221,26890439-26890495,26890581-26890664,
            26890759-26890828,26891015-26891169,26891557-26892095,
            26892327-26892393,26892436-26892984,26893574-26893768,
            26894485-26894569,26895822-26896441,26897154-26897486,
            26897552-26897616,26897868-26897955,26898250-26898331,
            26898720-26898796,26899152-26899256,26899496-26899630,
            26900199-26900888,26901474-26902261,26902990-26904673
          Length = 2825

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -3

Query: 662  GRGTQVSIVVVAATSPDQTGAEFVISHDAIMTLVLFPAVFFVGHNEFELVEVPSDTLPP* 483
            G   Q     + ++  D T ++F   H+ + + V+ P      +NE  +VE+PS  + P 
Sbjct: 1967 GNAKQTETETIYSSVDDSTSSDFSSVHNLVRSTVVAPCYSSSKNNERIIVELPSLMVRPF 2026

Query: 482  TVV 474
             VV
Sbjct: 2027 KVV 2029


>08_02_0200 -
           14179389-14180488,14180575-14180736,14180983-14181383,
           14182078-14182272,14182980-14183094,14183180-14183428,
           14184032-14184093,14184335-14184435,14184701-14184815,
           14185211-14185302,14187619-14187777
          Length = 916

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 206 LKGSGSW*EQYQRTVGTIDSRWV 138
           +KG   W  +YQR  GTID  W+
Sbjct: 701 VKGLDEWPNEYQRQYGTIDLYWI 723


>01_02_0116 -
           11252220-11253313,11253398-11253559,11253977-11254306,
           11254328-11254377,11255195-11255389,11255532-11255625,
           11255713-11255961,11256831-11256892,11257434-11257534,
           11257766-11257880,11258384-11258475,11259197-11259333,
           11259721-11259760
          Length = 906

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 206 LKGSGSW*EQYQRTVGTIDSRWV 138
           +KG   W  +YQR  GTID  W+
Sbjct: 693 VKGLDEWPNEYQRQYGTIDLYWI 715


>11_04_0454 -
           17895935-17896093,17896878-17896911,17897114-17897252,
           17897487-17897561,17897666-17897945
          Length = 228

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 666 RRQGHPSQYCRSRGHQPGPNRR 601
           RR+ H  ++ R RG QP PNRR
Sbjct: 27  RRRRHHQRHRRRRGGQPAPNRR 48


>08_01_0220 - 1751367-1752854
          Length = 495

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +2

Query: 359 ASYE*HMPSTSAQTSSRVLLSNKVS*YPRVFLLICSDGELPFKAAVYLTAPPQA 520
           A+++   PS +A+    +L+S  +  Y   FLL+  +   P +AAV L A P A
Sbjct: 2   ATHQRRHPSVAAELEGTLLISGDLFPY---FLLVALEAGGPLRAAVLLAAYPVA 52


>01_06_0125 + 26711157-26713297,26715026-26715206
          Length = 773

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 749 TDAGEYYGVDVIGIALSKRYDAY*RILEEGRGTQVSIVVVAATSPDQTGAE 597
           ++ GE  GVD I ++ S   D   + +E GRG    + ++     D  G E
Sbjct: 109 SEEGEVRGVDFIDLSSSSSDDEEEKEVEAGRGAGSRVPIIKEAPDDAEGDE 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,803,071
Number of Sequences: 37544
Number of extensions: 569740
Number of successful extensions: 1559
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1558
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)