Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0734
         (814 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)                     38   0.007
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.052
SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)                     34   0.12 
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.64 
SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45)             31   1.1  
SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      31   1.5  
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)                   30   1.9  
SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)                     29   4.5  
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084)              28   7.8  
SB_33704| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 696

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
 Frame = +3

Query: 504 RHLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNA-- 677
           R L +  L + +  +C+ +Y G   V +    CAG  R+G     N D G P   ++   
Sbjct: 221 RILQQAMLPIASHNDCKNKYYG---VSSTAHLCAGEARSGASGGCNGDSGGPLVCEDNGR 277

Query: 678 --LVGIVSFGKSNANDIYPVVLTSISSFTE 761
             L G VS+GK +    Y  V   ++S+T+
Sbjct: 278 WYLHGAVSYGKLHCPTTYYTVFARVASYTD 307


>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 35.5 bits (78), Expect = 0.052
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 4/114 (3%)
 Frame = +3

Query: 432 RNTPGYFC*SARMGNYRSRRQCI*RHLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGL 611
           R  PG  C     G      Q     L +  L + + ENCR +Y     V +    CAG 
Sbjct: 552 RPAPGKRCYITGWGAINGDTQQSPDILQQAMLPIASHENCRRKYGD---VSSTAHLCAGE 608

Query: 612 VRAGGRDYDNTDLGAPAFFQNA----LVGIVSFGKSNANDIYPVVLTSISSFTE 761
            R+      N D G P   ++     L G VS+G  N    +  V   ++S+T+
Sbjct: 609 ARSDAAGGCNGDSGGPLVCEDNGSWFLHGAVSYGLRNCPTTHYTVFARVASYTD 662


>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 366

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +3

Query: 471 GNYRSRRQCI*RHLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDL 650
           G  +  R  +   LH+  + + + + CR+ +   D +VT N FCAG   +   D    D 
Sbjct: 253 GKRKLWRDRVANRLHEATVPIVDIQTCRKAHP--DYIVTANMFCAGFENSSRGDACQGDS 310

Query: 651 GAPAFFQNAL 680
           G P    N L
Sbjct: 311 GGPFSVDNPL 320



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +1

Query: 319 HPEFSEENYDKDVSIVRVTHAIHF 390
           HP +S ++YD D++++R+   + F
Sbjct: 199 HPHYSPDSYDSDIALIRLAQPVTF 222


>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
 Frame = +3

Query: 510 LHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNA---- 677
           L +  L +     CR+QY+  DR       CAG  R G     N D G P   + +    
Sbjct: 636 LQQAMLPIAEHSLCRKQYRV-DRTAHP---CAGEARVGAAGGCNGDSGGPLVCEQSGVWV 691

Query: 678 LVGIVSFGKSNANDIYPVVLTSISSF 755
           L G VS+G       Y  V T +SS+
Sbjct: 692 LHGAVSYGARWCPTDYYTVFTRVSSY 717


>SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45)
          Length = 234

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
 Frame = +3

Query: 510 LHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQN----A 677
           L +  + + + E+C+ +Y     + +    CAG  +         D G P   +      
Sbjct: 87  LQQARIPIASHEDCKRKYGSG--IYSYTHLCAGEAKPNAAGACQGDSGGPLVCERNGQWT 144

Query: 678 LVGIVSFGKSNANDIYPVVLTSISSFTE 761
           L G+VSFG  N       V T +S++ +
Sbjct: 145 LYGVVSFGAGNCEVTSYTVYTKVSNYLD 172


>SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 907

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 663 RQGHPSQYCRSRGHQPGPNRR--RICYQSRRD 574
           RQG P +YCRS   Q GP RR  R  Y  +R+
Sbjct: 338 RQGTPDEYCRSSVKQIGPFRRFERRGYSKKRN 369


>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
          Length = 351

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 684 LLAHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 556
           L+ H G R  +PS+ C +      P  +++ YQS+  HD C +
Sbjct: 162 LICH-GCRGINPSKVCAACNGDFAPGEKKVGYQSKTFHDKCFI 203


>SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 347

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +3

Query: 510 LHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNA---- 677
           LH+  + + +++ C++ Y      V+    CAG   AGG D    D G P   +      
Sbjct: 252 LHQAAVPLVSRDTCQKAYNDLHYKVSSRMRCAG-YGAGGIDACQGDSGGPLVCKEGDVWY 310

Query: 678 LVGIVSFG 701
           L+G +S+G
Sbjct: 311 LMGAISWG 318


>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 531  VTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNA 677
            V N   C++ Y+     VT N  CAG  +   RD  N D G    F ++
Sbjct: 1321 VVNHNACKKAYENETWPVTSNMLCAG-YKNKSRDSCNRDSGGGFVFYDS 1368


>SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084)
          Length = 635

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 211 YLFPWR-ILRSCIPSHIAGSSRRSEP 285
           Y FP R I ++CI  H AGS+RR  P
Sbjct: 394 YTFPSRGISKTCIAFHPAGSNRRVHP 419


>SB_33704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 677

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 729 RGRCHWHCSFQKIRCLLAHFGRRQGHPSQYCRSRGHQPGPNRRRICY 589
           R  CH    F+++  LLA F R+  HP  + R   H   P  R++C+
Sbjct: 249 RQMCHPLAPFRQMCYLLAPFRRQMCHPLAHFRQMCHPLAP-FRQMCH 294


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,113,940
Number of Sequences: 59808
Number of extensions: 661373
Number of successful extensions: 1567
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1565
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)