Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0734
(814 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 32 0.56
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 31 1.3
Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z83238-2|CAB05793.1| 343|Caenorhabditis elegans Hypothetical pr... 30 2.3
U80837-5|AAB37901.1| 455|Caenorhabditis elegans Hypothetical pr... 30 2.3
U97593-6|AAB52879.2| 925|Caenorhabditis elegans Prion-like-(q/n... 29 3.0
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n... 29 3.0
AF077537-12|AAC26281.1| 346|Caenorhabditis elegans Hypothetical... 29 5.2
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr... 28 6.9
AC006662-3|AAF39895.1| 368|Caenorhabditis elegans Hypothetical ... 28 9.1
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 31.9 bits (69), Expect = 0.56
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 354 CEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFC 455
C+ +N+C L P+ GC PT CRNT C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +3
Query: 354 CEHRTS--NT-CHPLRPKHPAGCYYPTRCRNTPGY 449
CE + NT C P+ K P C+ RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897
>Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical
protein C30F2.1 protein.
Length = 307
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 378 CHPLRPKHPAGCYYPTRCRNTPG 446
C P+RPK P G P CR PG
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPG 124
>Z83238-2|CAB05793.1| 343|Caenorhabditis elegans Hypothetical
protein T08G3.2 protein.
Length = 343
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/77 (27%), Positives = 34/77 (44%)
Frame = +2
Query: 113 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRISLDLPVAVSPVK 292
S V + ++LP+LN F GI L + F + YRR D+ ++P K
Sbjct: 266 SPVFLVIYLPLLNLDFSLPMGIFLGIFSLYPALDAFILMYVVTDYRRALKDVLKVLNPFK 325
Query: 293 YLMFTLLLTIPNSLRRI 343
+ + L+ IP + I
Sbjct: 326 KVTVSTLVVIPGQAQFI 342
>U80837-5|AAB37901.1| 455|Caenorhabditis elegans Hypothetical
protein F07E5.1 protein.
Length = 455
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +3
Query: 132 YSYPS*INGSNSALVLFSPTTTTFQLL 212
YSYPS I +S +V+ + TTTTF LL
Sbjct: 75 YSYPSPIVLEHSFVVMTTTTTTTFSLL 101
>U97593-6|AAB52879.2| 925|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform c protein.
Length = 925
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 660 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 556
+GH RGH P P R R Y + HDPC V
Sbjct: 221 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 254
>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform a protein.
Length = 1175
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 660 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 556
+GH RGH P P R R Y + HDPC V
Sbjct: 340 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 373
>AF077537-12|AAC26281.1| 346|Caenorhabditis elegans Hypothetical
protein F16G10.14 protein.
Length = 346
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 244 IPSHIAGSSRRSEPGEISYVHFAVNHPEFSEENYDKDVSIV 366
IPS +A PGEI+ +V+ PE SEE +V+++
Sbjct: 31 IPSTLAPEESTLAPGEITMAPGSVSTPETSEETEAPEVTMM 71
>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical protein
T20F7.5 protein.
Length = 1065
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = -1
Query: 223 METGSS*KVVVVGENNTSALLEPLIQDG*EYFNLDQAGMLANRHRSTEIASSAAADGSEH 44
+E SS V E+ +EP++++ +Y +LD M + RHRS +I S D H
Sbjct: 907 LERKSSSTVPEKNEDELRVEIEPIMKELSDYESLD---MRSIRHRSDKIDSYFDLDSEFH 963
Query: 43 SY 38
Y
Sbjct: 964 DY 965
>AC006662-3|AAF39895.1| 368|Caenorhabditis elegans Hypothetical
protein H23L24.4 protein.
Length = 368
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +1
Query: 193 PLPFNCYLFPWRILRSCIPSHIAGSSRRSEPGEISYVHFAVNHPEFSEENYDKDVSIV 366
PL + + +R LR+ SH A + RSE I+++ N F +EN +++V I+
Sbjct: 307 PLLYFVFTRQFRDLRTMWNSHFASPASRSESYAITFLSGFSN---FDDENRNENVEII 361
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,709,018
Number of Sequences: 27780
Number of extensions: 464583
Number of successful extensions: 1167
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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