Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0732
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   2.3  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    26   5.4  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   7.1  
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    26   7.1  
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    26   7.1  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    26   7.1  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    25   9.4  

>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 236  INYFNSSTSVRIYKCALNEYTSLRITL 156
            +++F + T +   KC +N +TSLR  L
Sbjct: 1017 LSFFGNVTEINTNKCMINSWTSLRPVL 1043


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 634 IFMVLNQYYKIAIFIKFPPDAELRFVKFEFHSHWKTLINKK 512
           ++M+LN+Y ++A   K P        K + H H   L N+K
Sbjct: 304 MYMLLNEYQELADTKKVPHRDFYNVRKVDTHVHHSALANQK 344


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = -2

Query: 727  RTFT*KYGTGE*FMFKV*FNLNLYSLHVCEMIFMVLNQYYKIAIFIKFPPDAELRFVKFE 548
            RTFT  Y     F+  + +   +   +V   IF++L+  Y I I +K      L F  F 
Sbjct: 1272 RTFTGLYIVHLLFLLTIFYPCPIAYTYVRNSIFLILSICYTINICVKV---YGLSFYYF- 1327

Query: 547  FHSHW 533
            FHS W
Sbjct: 1328 FHSFW 1332


>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 284 LIANIPIRYNDYWQWLINYFNSSTSVRIYKCALNEYTSLR 165
           L +N+P+   DYW  L+N   S  ++   K   NE   +R
Sbjct: 209 LKSNVPLD-TDYWVDLLNSLKSYKAIAYLKKTFNEELQIR 247


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 628 MVLNQYYKIAIFIKFPPDAELRFVKFEFHSHWKTLINKKENYI 500
           M LN Y  I I    P  A++R  K +FH   K  + + +NY+
Sbjct: 1   MKLN-YVGIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYM 42


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 509 FLLIYKGLPVTVKFKFYKSQLCIRWK-FDKNRDFIVLI 619
           FLL+Y   P+ ++F  YK+ + ++ +    N  FIV+I
Sbjct: 89  FLLVYIDAPIMLRFNRYKTYVILQCQHVVANFKFIVII 126


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 452 RVTILDVF*IFCS*KLNVIFLLIYKGLPVTVKFK 553
           +V ILD F +F + K    F ++ K LPV  K K
Sbjct: 497 KVAILDTFNVFINQKFLDSFAIVDKLLPVLEKVK 530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,026,430
Number of Sequences: 5004
Number of extensions: 58400
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)