Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0732
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81585-6|CAB04684.2|  482|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF022973-5|AAC25797.4|  479|Caenorhabditis elegans Acetylcholine...    29   5.1  

>Z81585-6|CAB04684.2|  482|Caenorhabditis elegans Hypothetical
           protein T05E12.6a protein.
          Length = 482

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
 Frame = -2

Query: 565 RFVKFEFHSHWKTLINKKENYI*FS*TKNLKNVQNCDPTRTILLFXXXXXXIGT*KSFIL 386
           R V F F  +W    N   NY+  S + NL  +   D  + +L+       + T +  +L
Sbjct: 123 REVGFGFVIYWDEYPNFTTNYLNISKSNNLPPIYAIDLQQQVLISAETRVSL-TIQPPVL 181

Query: 385 TNTLKYF*NLV-FDSSIF--PYTYLEALVFNFTSRYVSSLIYLYVTMIIGN 242
           ++ L+Y   L+ FD   +  PY      + N  S++VS+   L   + IGN
Sbjct: 182 SSNLQYMRGLIFFDGPDWNSPYLGTGLELLNLKSQFVSTGAQL-TALYIGN 231


>AF022973-5|AAC25797.4|  479|Caenorhabditis elegans Acetylcholine
           receptor protein 15 protein.
          Length = 479

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 245 QWLINYFNSSTSVRIYKCALNEYTSLRITLH 153
           +W+I  + ++ +V+ Y+C   +Y  +  TLH
Sbjct: 191 EWIIIDYRTNITVKQYECCPEQYEDITFTLH 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,722,474
Number of Sequences: 27780
Number of extensions: 326198
Number of successful extensions: 612
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)