Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0732
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   5.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   7.5  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   10.0 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   10.0 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   10.0 

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 664 NLYSLHVCEMIFMVLNQYYKIA 599
           N+Y     E I++V N+Y KIA
Sbjct: 363 NIYERQNNEYIWIVSNKYQKIA 384


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 793 PGTTKNTCKYEVYMLKSDAQK 731
           PG  K+TCK ++     D Q+
Sbjct: 141 PGIFKSTCKIDITWFPFDDQR 161


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 793 PGTTKNTCKYEVYMLKSDAQ 734
           PG  K+TCK +V     D Q
Sbjct: 104 PGIFKSTCKMDVAWFPFDDQ 123


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 394 FILTNTLKYF*NLVFDSSIFPYTYLEALV 308
           F +   +K+   +V+ +S+FPY  L  L+
Sbjct: 222 FCIWKGVKWTGKVVYFTSLFPYALLTILL 250


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 394 FILTNTLKYF*NLVFDSSIFPYTYLEALV 308
           F +   +K+   +V+ +S+FPY  L  L+
Sbjct: 275 FCIWKGVKWTGKVVYFTSLFPYALLTILL 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,034
Number of Sequences: 438
Number of extensions: 4130
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)