Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0731
(787 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16337| Best HMM Match : efhand (HMM E-Value=3.7e-16) 98 6e-21
SB_866| Best HMM Match : efhand (HMM E-Value=7.4e-18) 81 1e-15
SB_10186| Best HMM Match : efhand (HMM E-Value=3e-14) 75 5e-14
SB_3224| Best HMM Match : efhand (HMM E-Value=0.00096) 62 7e-10
SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39) 57 2e-08
SB_44952| Best HMM Match : efhand (HMM E-Value=3.4e-39) 57 2e-08
SB_36414| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_7126| Best HMM Match : efhand (HMM E-Value=2e-26) 50 3e-06
SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29) 49 4e-06
SB_5690| Best HMM Match : efhand (HMM E-Value=7.39998e-41) 49 5e-06
SB_14640| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_10944| Best HMM Match : efhand (HMM E-Value=7.4e-24) 31 1.1
SB_644| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_48953| Best HMM Match : NIF3 (HMM E-Value=1.7e-12) 28 7.5
SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_23574| Best HMM Match : efhand (HMM E-Value=2e-05) 28 9.9
SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05) 28 9.9
>SB_16337| Best HMM Match : efhand (HMM E-Value=3.7e-16)
Length = 168
Score = 98.3 bits (234), Expect = 6e-21
Identities = 52/106 (49%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Frame = +3
Query: 255 DHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEASGPINFTQLLTLFANRMSGGSDED 434
D ++DG I KNDL+A FDSLG+L +++ +++M+ EASGPINFT LTLF ++S G+D +
Sbjct: 40 DQNRDGFIDKNDLKAVFDSLGKLVNDEYVEDMLNEASGPINFTMFLTLFGEKIS-GTDPE 98
Query: 435 DVVINAFKTFDEEGK--IDSERLRHAL*PGATSSPPTNHEAYDQMD 566
DV+ NAF +FD EGK ID E+L+ + S T E D MD
Sbjct: 99 DVIRNAFGSFDLEGKGSIDEEKLKRLC--MSMSDRMTAEEWEDMMD 142
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +1
Query: 166 KPQGKRTGSNVFSMFSQKQVAEFKEAFQL 252
K + +R SNVF+MF Q Q+ EFKEAF +
Sbjct: 10 KKKAQRATSNVFAMFEQSQIQEFKEAFNM 38
>SB_866| Best HMM Match : efhand (HMM E-Value=7.4e-18)
Length = 171
Score = 80.6 bits (190), Expect = 1e-15
Identities = 47/123 (38%), Positives = 70/123 (56%), Gaps = 3/123 (2%)
Frame = +3
Query: 255 DHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEASGPINFTQLLTLFANRMSGGSDED 434
D + DG I K DL SLG+ ++ L+EMV E+ GPINFT LTLF +++ G+D +
Sbjct: 41 DQNHDGFIDKEDLHDMLASLGKDPTDGYLEEMVKESPGPINFTMFLTLFGEKLN-GTDPE 99
Query: 435 DVVINAFKTFDEE--GKIDSERLRHAL*P-GATSSPPTNHEAYDQMDIDDKGYIDTTKLI 605
DV+ NAF FDE+ G+I + L+ A+ G S + ID +G++D +K
Sbjct: 100 DVIRNAFACFDEDGNGRIHEDLLKEAMMSMGDRFSDEQVDDILRDAPIDKEGFLDYSKFT 159
Query: 606 AML 614
+L
Sbjct: 160 RIL 162
Score = 37.9 bits (84), Expect = 0.009
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 166 KPQGKRTGSNVFSMFSQKQVAEFKEAFQL 252
K + R SNVF+MF Q Q+ EFKEAF +
Sbjct: 11 KKRAHRATSNVFAMFDQSQIQEFKEAFNM 39
>SB_10186| Best HMM Match : efhand (HMM E-Value=3e-14)
Length = 133
Score = 75.4 bits (177), Expect = 5e-14
Identities = 37/75 (49%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Frame = +3
Query: 255 DHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEASG-PINFTQLLTLFANRMSGGSDE 431
D ++DG I K DL+ + SLG+ +++ LD+M+ EASG INFT LTLF +++ G+D
Sbjct: 41 DQNRDGFIDKEDLKDMYASLGKSPNDQFLDDMIEEASGSTINFTMFLTLFGEKLN-GTDP 99
Query: 432 DDVVINAFKTFDEEG 476
+DV+ NAF FDEEG
Sbjct: 100 EDVIKNAFGCFDEEG 114
Score = 38.3 bits (85), Expect = 0.007
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +1
Query: 166 KPQGKRTGSNVFSMFSQKQVAEFKEAFQL 252
K + +R SNVF+MF Q Q+ EFKEAF +
Sbjct: 11 KKRAQRATSNVFAMFDQTQIQEFKEAFNM 39
>SB_3224| Best HMM Match : efhand (HMM E-Value=0.00096)
Length = 322
Score = 61.7 bits (143), Expect = 7e-10
Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Frame = +3
Query: 285 NDLRATFDSLGRLASEKELDEMVGEASGPINFTQLLTLFANRMSGGSDEDDVVINAFKTF 464
+DLR T SLG+ + +E+D+M+ E NFT L++F RM+ +D +D+++ AF
Sbjct: 178 DDLRGTLSSLGQKPTFEEIDDMM-EGKPSFNFTSFLSMFGLRMA-NTDPEDIILRAFSCL 235
Query: 465 DE--EGKIDSERLRHAL*P-GATSSPPTNHEAYDQMDIDDKGYIDTTKLIAML 614
D+ +GK+ ++ LR L G + +D + D G +D KL+ +L
Sbjct: 236 DDGGDGKLSAKMLRELLTTMGQRMKYSDVTQLFDDVGADQDGNLDYVKLVRLL 288
>SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39)
Length = 659
Score = 56.8 bits (131), Expect = 2e-08
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Frame = +3
Query: 255 DHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLLTLFANRMSGG 422
D D DG I +L SLG+ +E EL +M+ E +G I+F + LT+ A +M
Sbjct: 10 DKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKN- 68
Query: 423 SDEDDVVINAFKTFDEEGK--IDSERLRHAL*P-GATSSPPTNHEAYDQMDIDDKGYID 590
+D ++ + AF+ FD++G I + LRH + G + E + DID G ++
Sbjct: 69 TDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 127
Score = 32.3 bits (70), Expect = 0.46
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 255 DHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQ 386
D D +G I +LR +LG +++E+DEM+ EA G +N+ +
Sbjct: 83 DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYDE 130
>SB_44952| Best HMM Match : efhand (HMM E-Value=3.4e-39)
Length = 250
Score = 56.8 bits (131), Expect = 2e-08
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Frame = +3
Query: 255 DHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLLTLFANRMSGG 422
D D DG I +L SLG+ +E EL +M+ E +G I+F + LT+ A +M
Sbjct: 10 DKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKN- 68
Query: 423 SDEDDVVINAFKTFDEEGK--IDSERLRHAL*P-GATSSPPTNHEAYDQMDIDDKGYID 590
+D ++ + AF+ FD++G I + LRH + G + E + DID G ++
Sbjct: 69 TDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 127
Score = 32.3 bits (70), Expect = 0.46
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 255 DHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQ 386
D D +G I +LR +LG +++E+DEM+ EA G +N+ +
Sbjct: 83 DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYDE 130
>SB_36414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 56.4 bits (130), Expect = 2e-08
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Frame = +3
Query: 255 DHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLLTLFANRMSGG 422
D D DG I +L SLG+ +E EL +M+ E +G I+F + LT+ A +M
Sbjct: 21 DKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKD- 79
Query: 423 SDEDDVVINAFKTFDEEGK--IDSERLRHAL*P-GATSSPPTNHEAYDQMDIDDKGYID 590
+D ++ + AF+ FD++G I + LRH + G + E + DID G ++
Sbjct: 80 TDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 138
>SB_7126| Best HMM Match : efhand (HMM E-Value=2e-26)
Length = 213
Score = 49.6 bits (113), Expect = 3e-06
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Frame = +3
Query: 309 SLGRLASEKELDEMVGEA----SGPINFTQLLTLFANRMSGGSDEDDVVINAFKTFDEEG 476
SLG+ +E EL +M+ E +G I+F + LT+ A +M G D D+ + AF+ FD++G
Sbjct: 3 SLGQNPTEAELQDMINEVDADGNGIIDFPEFLTMMAKKM-GEQDSDEEIREAFRVFDKDG 61
Query: 477 K--IDSERLRHAL*P-GATSSPPTNHEAYDQMDIDDKGYID 590
I + LRH + G + E + DID G ++
Sbjct: 62 NGFISAAELRHVMTNLGEKLTDEEVEEMIMEADIDGDGQVN 102
>SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29)
Length = 420
Score = 49.2 bits (112), Expect = 4e-06
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Frame = +3
Query: 255 DHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLLTLFANRMSGG 422
D D G I ++L SLG+ +E+EL +M+ E +G I+F + L + A ++
Sbjct: 300 DKDGGGSISSSELAHVMRSLGQNPTEQELKDMIAEVDQDDNGEIDFPEFLQMVAKKIKE- 358
Query: 423 SDEDDVVINAFKTFDE--EGKIDSERLRHAL*P-GATSSPPTNHEAYDQMDIDDKGYID 590
+D ++ + +AFK FD+ +G I S L+ + G + E + DID G ID
Sbjct: 359 TDTEEEIQDAFKVFDKNGDGMISSSELKLVMSNLGERLTDDEVDEMIREADIDGDGMID 417
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 213 TEAGR*VQGGIPANDHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA 362
T+ +Q D + DG+I ++L+ +LG ++ E+DEM+ EA
Sbjct: 359 TDTEEEIQDAFKVFDKNGDGMISSSELKLVMSNLGERLTDDEVDEMIREA 408
>SB_5690| Best HMM Match : efhand (HMM E-Value=7.39998e-41)
Length = 153
Score = 48.8 bits (111), Expect = 5e-06
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 7/133 (5%)
Frame = +3
Query: 237 GGIPANDHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGE----ASGPINFTQLLTLFA 404
GG D D G I +L SLG+ S++EL +M+ E +G ++F + L +
Sbjct: 4 GGFSLFDKDGSGTISNEELEVVMKSLGQNPSDEELQQMIQEVDADGNGEVDFEEFLAMMK 63
Query: 405 NRMSGGSDEDDVVINAFKTFDE--EGKIDSERLRHAL*P-GATSSPPTNHEAYDQMDIDD 575
+M D + + AF+ FD +G I LR + G S E + D+D
Sbjct: 64 KQMQ-HRDAEAEMREAFRVFDRNGDGSISEWELRSVMASLGEKLSDDEIKEMMREADLDG 122
Query: 576 KGYIDTTKLIAML 614
G I+ + + M+
Sbjct: 123 DGVINFQEFVQMV 135
>SB_14640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 45.2 bits (102), Expect = 6e-05
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Frame = +3
Query: 255 DHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLLTLFANRMSGG 422
D D G + +L +LG +E+E+ EMV E +G ++F + + L N+
Sbjct: 158 DADGSGHVTTKELHKAMRTLGFNPTEEEIQEMVNEVDYDGNGVLDFNEFVDLMENQKKPD 217
Query: 423 SDEDDVVINAFKTF--DEEGKIDSERLRHAL 509
+E D+ INAF F D++G I++ LR L
Sbjct: 218 EEEQDL-INAFHVFDSDDKGYIEASELRDLL 247
>SB_10944| Best HMM Match : efhand (HMM E-Value=7.4e-24)
Length = 127
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +3
Query: 393 TLFANRMSGGSDEDDVVINAFKTF--DEEGKIDSERL-RHAL*PGATSSPPTNHEAYDQM 563
T+ A + D + ++ AFK F DE GKI + L R A G + E D+
Sbjct: 45 TIDAKELKSEKDSKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEA 104
Query: 564 DIDDKGYIDTTKLIAML 614
D D G I+ + + ++
Sbjct: 105 DRDGDGEINEAEFLRIM 121
>SB_644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 29.5 bits (63), Expect = 3.2
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 6/128 (4%)
Frame = +3
Query: 255 DHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEASGPINFTQLLTLFANRMSG-GSDE 431
D D +G+I +++ F +G +EKE E+V +A M G G
Sbjct: 98 DKDGNGLISAQEMKFVFTCMGFNITEKEAVELVKQAD---------------MDGDGHIN 142
Query: 432 DDVVINAFKTFDE--EGKIDSERLRHAL*PGATSSPPTNHE---AYDQMDIDDKGYIDTT 596
+ NAF +FD+ +G+ID+E L + + P + E Q D D G ID
Sbjct: 143 YEEFKNAFMSFDKNVDGRIDAEELE--IVTRSIGLHPKDEELKAMIKQADKDGSGDIDLP 200
Query: 597 KLIAMLTA 620
+ I ++ +
Sbjct: 201 EFIELMAS 208
>SB_48953| Best HMM Match : NIF3 (HMM E-Value=1.7e-12)
Length = 288
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 348 MVGEASGPINFTQLLTLFANRMSGGSDEDDVVINA-FKTFDEEGKIDSERLRHAL*PGA 521
M+GE P+N T+ L N+M G ++N K G S +++AL GA
Sbjct: 166 MIGEFETPMNETEFLAFVKNKMQCGGIRHSALLNKNIKKVAVLGGSGSYAIKNALQAGA 224
>SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 331
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 516 GATSSPPTNHEAYDQMDIDDKGYIDTTK 599
GAT PP N + D +D KGY+ K
Sbjct: 104 GATFLPPANVKVVDSIDWRSKGYVTPVK 131
>SB_23574| Best HMM Match : efhand (HMM E-Value=2e-05)
Length = 69
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 255 DHDKDGIIGKNDLRATFDSLGRLASEKELDE-MVG 356
D + +G+IG +LR SLG S++E+D MVG
Sbjct: 15 DRNGNGLIGAAELRHLLASLGDKLSDEEVDNLMVG 49
>SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05)
Length = 340
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Frame = +3
Query: 270 GIIGKNDLRATFDSLGRLASEKELDEMVGE----ASGPINFTQLL 392
G++ + LRA D+LGR+A+ +E+ E + E +SG ++F + L
Sbjct: 164 GVLCRILLRAIPDTLGRMATTEEIKEAMLEVDVDSSGTVDFFEFL 208
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,306,622
Number of Sequences: 59808
Number of extensions: 314928
Number of successful extensions: 1013
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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