Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0731
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   4.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   7.4  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   9.8  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.8  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 423 SDEDDVVINAFKTFDEEGK 479
           ++ D+ ++NAFKT  +E K
Sbjct: 128 TERDNHLVNAFKTLTQEPK 146


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 440 DVIFVRAAGHAVGE 399
           D+I+VRA G AVG+
Sbjct: 34  DIIWVRADGSAVGD 47


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +3

Query: 747 NFFILISTYIII 782
           +FFI+I TYIII
Sbjct: 412 SFFIVIFTYIII 423


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +3

Query: 246 PANDHDKDGIIGKNDLRATFD 308
           P+   DKD +I    L   FD
Sbjct: 19  PSGGADKDAVITSQQLEVNFD 39


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 453 FKTFDEEGKIDSERLRHAL*PGAT 524
           F+  +E  KIDS   R  +  GAT
Sbjct: 371 FRCLEENNKIDSRVTRFVVAVGAT 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,954
Number of Sequences: 438
Number of extensions: 2424
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)