Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0728
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...   149   3e-37
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    44   2e-05
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    37   0.003
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    29   0.65 
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.5  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    26   4.6  
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ...    26   4.6  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   6.1  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score =  149 bits (362), Expect = 3e-37
 Identities = 75/85 (88%), Positives = 79/85 (92%)
 Frame = +1

Query: 256 MSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSV 435
           MS K GGGSLTALPVIETQ GDVSAYIPTNVISITDGQIFLE+ELF+KGIRPAINVGLSV
Sbjct: 340 MSPKHGGGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLESELFFKGIRPAINVGLSV 399

Query: 436 SRVGSAAQTKAMKQVAGSMKLELAR 510
           SRVGSAAQ KAMKQVAG +KL LA+
Sbjct: 400 SRVGSAAQVKAMKQVAGQIKLFLAQ 424



 Score =  126 bits (305), Expect = 2e-30
 Identities = 56/65 (86%), Positives = 64/65 (98%)
 Frame = +3

Query: 6   YTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRR 185
           Y+IIV+ATAS++APLQYLAP+SGCAMGE+FRDNGKH L++YDDLSKQAVAYRQMSLLLRR
Sbjct: 256 YSIIVAATASESAPLQYLAPFSGCAMGEWFRDNGKHGLVVYDDLSKQAVAYRQMSLLLRR 315

Query: 186 PPGRE 200
           PPGRE
Sbjct: 316 PPGRE 320



 Score =  101 bits (241), Expect = 1e-22
 Identities = 44/68 (64%), Positives = 57/68 (83%)
 Frame = +3

Query: 501 IGSYREVAAFAQFGSDLDAATQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHL 680
           +  YREVA+FAQFGSDLDA T+  L+RG+RLTELLKQ QY P+A+EEQV +IYCGV+G+L
Sbjct: 422 LAQYREVASFAQFGSDLDAGTRATLDRGLRLTELLKQPQYSPLAVEEQVPLIYCGVKGYL 481

Query: 681 DKLDPSKI 704
           DK+   ++
Sbjct: 482 DKIPVDRV 489



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 18/22 (81%), Positives = 19/22 (86%)
 Frame = +2

Query: 203 YPGDVFYLHSRLLERAARCLTK 268
           YPGDVFYLHSRLLERAA+   K
Sbjct: 322 YPGDVFYLHSRLLERAAKMSPK 343


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 24/65 (36%), Positives = 38/65 (58%)
 Frame = +1

Query: 277 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 456
           GS+T +P++     D++  IP     IT+GQIF++ +L    I P INV  S+SR+  +A
Sbjct: 324 GSITQIPILTMPNDDITHPIPDLTGYITEGQIFVDRQLHNNAIYPPINVLPSLSRLMKSA 383

Query: 457 QTKAM 471
             + M
Sbjct: 384 IGEGM 388



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 30  ASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 197
           A+D    + + P    +  EF      KH L I  D++  A A R++S      PGR
Sbjct: 242 ANDPTIERIITPRLALSASEFLAYQTEKHVLTILTDMTSYADALREVSAAREEVPGR 298


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 18/61 (29%), Positives = 34/61 (55%)
 Frame = +3

Query: 9   TIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRP 188
           T +V+ T++     +  + Y+G  + E++RD GK+  ++ D  S+ A A R++S  L   
Sbjct: 317 TTLVANTSNMPVAAREASIYTGITLAEYYRDQGKNVSMMADSTSRWAEALREISGRLAEM 376

Query: 189 P 191
           P
Sbjct: 377 P 377


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 574 SSCCVAASKSEPN-WAKAATSRYEPIPASWNRPPA 473
           +S  V++S S P  WAK A+S     PA W +P A
Sbjct: 412 ASTSVSSSTSSPAPWAKPASSAAPSNPAPWQQPAA 446


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 135 LSKQAVAYRQMSLLLRRPP 191
           LSK+A+ YR+  L L+RPP
Sbjct: 102 LSKRALHYRRKRLALKRPP 120


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 514 VRSQLLPSSVLTWMPLHSSCSTEECVLLSSSSKDN 618
           +R    P   L W PLH +  +    LL+S SKDN
Sbjct: 216 LRRHTKPIMALCWQPLHLAPDSGP-YLLASGSKDN 249


>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 23/80 (28%), Positives = 32/80 (40%)
 Frame = +3

Query: 447 ICCSDQGYEAGGRFHEAGIGSYREVAAFAQFGSDLDAATQQLLNRGMRLTELLKQGQYVP 626
           + C DQ    G R  E   G Y  V  F      LD   + L+NRG       +Q    P
Sbjct: 104 VFCHDQEMLVGPRTKEGQPG-YHVVTPFI-----LDDGRRILVNRGWIARSFAEQSSRDP 157

Query: 627 MAIEEQVAIIYCGVRGHLDK 686
            ++ +   +I   +R H DK
Sbjct: 158 SSLPKGPVVIEGLLRQHTDK 177


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 668 DTAVNDGDLFLNSHGHILSLLEELSKTHSSVEQLLCSGIQVRTEL 534
           D  ++ G+   + +  I+SLL+ELS   S  E    S +Q+ +E+
Sbjct: 65  DAKLSMGEKMDDLNSSIVSLLQELSTLQSVAENTQSSIVQMTSEI 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,976,240
Number of Sequences: 5004
Number of extensions: 60357
Number of successful extensions: 184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)