Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0728
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 42 6e-04
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 42 6e-04
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 34 0.13
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 33 0.29
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467... 31 1.2
09_04_0131 + 14917239-14918510,14918803-14918895 29 2.7
07_03_1173 - 24526632-24526755,24527057-24527226,24527441-245275... 29 2.7
08_02_1619 - 28283250-28285238 29 4.8
05_06_0198 + 26300872-26301519,26302939-26303028,26303118-26303189 28 6.3
03_06_0128 - 31879286-31879381,31879463-31879574,31879680-318797... 28 6.3
01_06_1261 - 35826513-35828941,35829201-35829294 28 6.3
01_05_0397 + 21753095-21753814 28 6.3
01_05_0249 - 19903154-19903454,19904114-19904168,19904707-199047... 28 6.3
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010... 28 8.4
06_01_1136 + 9407282-9407663,9408075-9408227,9408336-9408539,940... 28 8.4
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = +1
Query: 277 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 456
GS+T +P++ D++ P IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 363 GSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSA 422
Query: 457 QTKAM 471
+ M
Sbjct: 423 IGEGM 427
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 30 ASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 197
A+D + + P E+ + GKH L+I D+S A A R++S PGR
Sbjct: 281 ANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGR 337
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = +1
Query: 277 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 456
GS+T +P++ D++ P IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 333 GSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSA 392
Query: 457 QTKAM 471
+ M
Sbjct: 393 IGEGM 397
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 30 ASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 197
A+D + + P E+ + GKH L+I D+S A A R++S PGR
Sbjct: 251 ANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGR 307
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +3
Query: 9 TIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRP 188
T +V+ T++ + + Y+G + E+FRD G + ++ D S+ A A R++S L
Sbjct: 329 TTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEM 388
Query: 189 P 191
P
Sbjct: 389 P 389
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 32.7 bits (71), Expect = 0.29
Identities = 17/61 (27%), Positives = 33/61 (54%)
Frame = +3
Query: 9 TIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRP 188
T +V+ T++ + + Y+G + E++RD G + ++ D S+ A A R++S L
Sbjct: 315 TTLVANTSNMPVAAREASIYTGITIAEYYRDMGYNVSMMADSTSRWAEALREISGRLAEM 374
Query: 189 P 191
P
Sbjct: 375 P 375
>01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,
4675953-4676072,4676185-4676313,4676394-4676442,
4676899-4676970,4677574-4677707,4677798-4677915,
4678332-4678541,4678630-4678942,4679539-4679632,
4679854-4679962,4680243-4680514,4680597-4680724,
4680832-4681066,4681570-4681758,4681845-4682128,
4682218-4682398,4682486-4682728,4682904-4682986,
4683119-4683227,4687996-4688091,4688675-4688764,
4688881-4689129,4689233-4689412,4690179-4690250,
4691385-4691474,4691605-4691705,4691794-4691959
Length = 1757
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +1
Query: 406 RPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELARTVRS-QLLPSSVLTWMPLHSSCSTE 582
R I++G+SV+R+ S + K +K V L+ +T+ + +SVL W SCS +
Sbjct: 1533 RQVISLGVSVTRLYSGSLDKTIK-VWDLKTLQCVQTLSEHKAAVTSVLCWDEKLLSCSLD 1591
Query: 583 ECVLLSSSSK 612
+ V + ++SK
Sbjct: 1592 KTVKIWAASK 1601
>09_04_0131 + 14917239-14918510,14918803-14918895
Length = 454
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 57 LAPYSGCAMGEFFRDNGKHALIIYDDLSK 143
L Y+ F RDN KHAL+ Y DL K
Sbjct: 75 LYTYNALMSSHFKRDNIKHALVFYYDLLK 103
>07_03_1173 -
24526632-24526755,24527057-24527226,24527441-24527506,
24527858-24527953,24528340-24528438,24528730-24528819,
24529016-24529111,24529561-24529654,24530254-24530351,
24530395-24530679
Length = 405
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 607 LRSSVRRIPLLSSCCVAASKSEPNWAKAATSRYEPIPASWNRP 479
L + R+P+ +SCC+ S N +K PI +S RP
Sbjct: 68 LAKRIERVPVQASCCLNPSPPPQNLSKMTGFSQSPILSSCVRP 110
>08_02_1619 - 28283250-28285238
Length = 662
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/56 (23%), Positives = 23/56 (41%)
Frame = -3
Query: 640 SSIAMGTYCPCLRSSVRRIPLLSSCCVAASKSEPNWAKAATSRYEPIPASWNRPPA 473
+ +A G P ++ + L CC + + P A+ E P + +RP A
Sbjct: 588 AEVARGVRSPAEEGLLQALKLAMGCCAPVASARPTMAEVVRQLEEVRPRNSSRPSA 643
>05_06_0198 + 26300872-26301519,26302939-26303028,26303118-26303189
Length = 269
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/47 (42%), Positives = 24/47 (51%)
Frame = +2
Query: 116 PYYLRRFVQTSRSLPSDVSTAASSPRP*GYPGDVFYLHSRLLERAAR 256
P + RR VQT S SD + A S+P P P + SRLL A R
Sbjct: 28 PRHRRRRVQTLSSSSSDAAAAPSTPPPVWPPASL----SRLLAAALR 70
>03_06_0128 -
31879286-31879381,31879463-31879574,31879680-31879747,
31880959-31881072,31881207-31881247,31881340-31881393,
31881785-31881866,31882063-31882116
Length = 206
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 393 LQRYPTSHQRRSVCIACRIC 452
L+RYPT +R CIAC++C
Sbjct: 97 LRRYPTGEER---CIACKLC 113
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -2
Query: 692 VQLVEVTADTAVNDGDLFLNSHGHILSLLEELSKTHSSVEQLLCSGIQVRTELGKS 525
++L+++ ADT DL+ S +++ +EE T+ S + L +V EL KS
Sbjct: 41 IKLIDIEADTFARKADLYFKSRPDLINHVEE---TYRSYQALADRYDRVSGELHKS 93
>01_05_0397 + 21753095-21753814
Length = 239
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = +3
Query: 18 VSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 197
V+A D P+ A + AM +F D+ KH YD ++KQ V LR PP R
Sbjct: 110 VAAAQDDGRPVG--AYWCSAAMSAYF-DDKKH----YDQVTKQVVVAAADRCFLRTPPRR 162
>01_05_0249 -
19903154-19903454,19904114-19904168,19904707-19904791,
19905140-19905511
Length = 270
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 438 ACRICCSDQGYEAGGRFHEAGIGSYREVAAFAQFGSDLDAA 560
ACR+ Q AGG + I R+V A A+ G DAA
Sbjct: 37 ACRLAVLIQEATAGGGSNAVAISKLRKVVATARGGGGSDAA 77
>11_06_0340 -
22500411-22500566,22500660-22500783,22500914-22501080,
22501157-22501336,22501544-22502427,22502728-22502843,
22503745-22504217
Length = 699
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 393 LQRYPTSHQRRSVCIACRICCSDQGYEAGGRF 488
L+ Y TS+ +S+ + CR C GY A RF
Sbjct: 438 LKAYITSYTAKSISV-CRESCGGHGYAAVNRF 468
>06_01_1136 +
9407282-9407663,9408075-9408227,9408336-9408539,
9408709-9409174,9409434-9409575
Length = 448
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 111 VCHYHGKIHPWHNQSKEP 58
VCHY+ +HP HN+ K+P
Sbjct: 242 VCHYN--VHPIHNELKDP 257
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,789,182
Number of Sequences: 37544
Number of extensions: 487330
Number of successful extensions: 1532
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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