Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0728
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)             147   7e-36
SB_42081| Best HMM Match : ATP-synt_ab (HMM E-Value=8.3e-07)          131   5e-31
SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                120   2e-27
SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 38   0.011
SB_17671| Best HMM Match : 7tm_1 (HMM E-Value=0.00083)                 30   1.6  
SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)                  30   2.1  
SB_12744| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.8  
SB_16695| Best HMM Match : MTHFR (HMM E-Value=2.10195e-44)             28   8.5  
SB_8742| Best HMM Match : TPR_2 (HMM E-Value=0.00046)                  28   8.5  

>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score =  147 bits (357), Expect = 7e-36
 Identities = 76/97 (78%), Positives = 83/97 (85%), Gaps = 1/97 (1%)
 Frame = +1

Query: 256 MSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSV 435
           M+D  GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSV
Sbjct: 261 MNDSNGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSV 320

Query: 436 SRVGSAAQTKAMKQVA-GSMKLELARTVRSQLLPSSV 543
           SRVGSAAQTKAMKQ +   +   +   V + ++PSSV
Sbjct: 321 SRVGSAAQTKAMKQTSFAGLSNVVIGAVPTNVVPSSV 357



 Score =  138 bits (334), Expect = 4e-33
 Identities = 65/65 (100%), Positives = 65/65 (100%)
 Frame = +3

Query: 6   YTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRR 185
           YTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRR
Sbjct: 177 YTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRR 236

Query: 186 PPGRE 200
           PPGRE
Sbjct: 237 PPGRE 241



 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +2

Query: 203 YPGDVFYLHSRLLERAAR 256
           YPGDVFYLHSRLLERAA+
Sbjct: 243 YPGDVFYLHSRLLERAAK 260


>SB_42081| Best HMM Match : ATP-synt_ab (HMM E-Value=8.3e-07)
          Length = 99

 Score =  131 bits (317), Expect = 5e-31
 Identities = 63/76 (82%), Positives = 70/76 (92%)
 Frame = +1

Query: 256 MSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSV 435
           +SD +G GSLTALP+IETQAGDVSAYIPTNVISITDGQIFL++ELFY GIRPAINVGLSV
Sbjct: 23  LSDALGAGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLDSELFYNGIRPAINVGLSV 82

Query: 436 SRVGSAAQTKAMKQVA 483
           SRVGSAAQ   MK++A
Sbjct: 83  SRVGSAAQVAMMKKLA 98



 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +2

Query: 203 YPGDVFYLHSRLLERAAR 256
           YPGDVFYLHSRLLERAA+
Sbjct: 5   YPGDVFYLHSRLLERAAK 22


>SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 313

 Score =  120 bits (288), Expect = 2e-27
 Identities = 55/78 (70%), Positives = 69/78 (88%)
 Frame = +1

Query: 277 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 456
           GSLTALP+IETQAGDVSA++PTNVISITDGQIFLE+ +F  GIRPA+N G+SVSRVG AA
Sbjct: 122 GSLTALPIIETQAGDVSAFVPTNVISITDGQIFLESAMFNSGIRPAVNAGISVSRVGGAA 181

Query: 457 QTKAMKQVAGSMKLELAR 510
           QTK +K+++G ++  LA+
Sbjct: 182 QTKIIKKLSGGIRTALAQ 199



 Score =  110 bits (264), Expect = 1e-24
 Identities = 48/64 (75%), Positives = 60/64 (93%)
 Frame = +3

Query: 9   TIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRP 188
           TI+V+A+AS++A LQ++APY+GC MGE+FRD G+ ALI+YDDLSKQAVAYRQ+SLLLRRP
Sbjct: 21  TIVVAASASESAALQFIAPYAGCTMGEYFRDRGEDALIVYDDLSKQAVAYRQISLLLRRP 80

Query: 189 PGRE 200
           PGRE
Sbjct: 81  PGRE 84



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 33/68 (48%), Positives = 46/68 (67%)
 Frame = +3

Query: 501 IGSYREVAAFAQFGSDLDAATQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHL 680
           +  YRE+AAFAQF SDLD AT++ L  G R+TEL+KQ QY PM+I +    +Y   RG L
Sbjct: 197 LAQYRELAAFAQFASDLDEATRKQLEHGQRVTELMKQKQYAPMSIADMSVSLYAAERGFL 256

Query: 681 DKLDPSKI 704
             ++ +K+
Sbjct: 257 VDIEVAKV 264



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = +2

Query: 203 YPGDVFYLHSRLLERAARCLTKWV 274
           YPGDVFYLHSRLLERA+R   ++V
Sbjct: 86  YPGDVFYLHSRLLERASRVSEEYV 109


>SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 23/65 (35%), Positives = 39/65 (60%)
 Frame = +1

Query: 277 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 456
           GS+T +P++     D++  IP     IT+GQI+++ +L  + I P INV  S+SR+  +A
Sbjct: 264 GSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 323

Query: 457 QTKAM 471
             + M
Sbjct: 324 IGEGM 328



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 30  ASDAAPLQYLAPYSGCAMGEFFRDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 197
           A+D    + + P       EF      KH L+I  D+S  A A R++S      PGR
Sbjct: 182 ANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGR 238


>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 475

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = +3

Query: 9   TIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRP 188
           T +V+ T++     +  + Y+G  + E+FRD G H  ++ D  S+ A A R++S  L   
Sbjct: 167 TALVANTSNMPVAAREASIYTGITLSEYFRDMGHHVSMMADSTSRWAEALREISGRLAEM 226

Query: 189 P 191
           P
Sbjct: 227 P 227


>SB_17671| Best HMM Match : 7tm_1 (HMM E-Value=0.00083)
          Length = 585

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 150 VAYRQMSLLLRRPPGREVILVTCSIFTPVCLSVPLDV 260
           V +R  S   RRP GR+V+L   S    + L VPL +
Sbjct: 43  VVFRFQSKGSRRPQGRDVLLAALSFLNSLVLLVPLPI 79


>SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)
          Length = 776

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = +1

Query: 448 SAAQTKAMKQVAGSMKLELARTVRSQLLPSSVLTWMPLHSSCSTEECVLLSSSSKDNM 621
           S A     K+  GS +  LARTVR +L P+   T M   +S + ++     SSS+D++
Sbjct: 514 SGAGGGCRKRNIGSKRTALARTVRQRLNPA---TGMKFRASLAAQQDSTSDSSSEDDL 568


>SB_12744| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = +3

Query: 450 CCSDQGYEAGGRFHEAGIGSYREVAAFAQFGSDLDAATQQLLNRGMRLTELLKQGQYV 623
           CC D G EAGG+      G    +  + Q   D    ++ L+N+G+R T +L  GQ+V
Sbjct: 526 CCID-GREAGGKIEIIADGW--SIQLYGQHIMD----SETLINKGLRPTRVLFSGQWV 576


>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 93  FRDNGKHALIIYDDLSKQAVAYRQM 167
           +R  G HA I+YD L   +VA R+M
Sbjct: 349 YRKGGDHAYILYDSLDAASVAAREM 373


>SB_16695| Best HMM Match : MTHFR (HMM E-Value=2.10195e-44)
          Length = 543

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +1

Query: 367 QIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELARTVRSQLL 531
           Q+F E E F K  R   N+G+ +  +      + ++ V    K+  A  V +++L
Sbjct: 184 QLFFEVETFIKFERDCRNIGIDIPIIPGILPIQNLQTVRNLRKMNFAVKVPNEIL 238


>SB_8742| Best HMM Match : TPR_2 (HMM E-Value=0.00046)
          Length = 940

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 31/152 (20%), Positives = 66/152 (43%), Gaps = 3/152 (1%)
 Frame = +1

Query: 190  PAVRLSW*RVLSSLPSA*ACR*MSDKMGGG-SLTALPVIETQAGDVSAYIPTNV--ISIT 360
            PA+ L   R   S  +  A   + D+ GG  S +A P           + P ++   ++ 
Sbjct: 557  PALGLDGIRKSKSFTNDEANFLLDDQQGGHLSNSASPETSPLNPSSKEFYPRSLSLTNLD 616

Query: 361  DGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELARTVRSQLLPSS 540
            DG   L+       +  A N+ +++ ++ S      ++ +  +M  ++++T  + ++ + 
Sbjct: 617  DGTTTLQPPCLPTDVTSAENINMNI-KIPSLHDDNIVEWLVPNMADKISKTEDNNIVSNC 675

Query: 541  VLTWMPLHSSCSTEECVLLSSSSKDNMCPWLL 636
            V T     S+C+T+       S+KD+    LL
Sbjct: 676  VDTGTETVSNCTTDASFSPGKSAKDSSSDSLL 707


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,799,579
Number of Sequences: 59808
Number of extensions: 509334
Number of successful extensions: 1400
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)